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# Date Author Comment
77b3215e 05/06/2015 05:46 PM Andreas Müller

add update script and JAXB annotation for sequence positions #4743

ec3a066d 05/06/2015 05:38 PM Andreas Müller

Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing

ef4f2e8e 05/05/2015 05:52 PM Andreas Müller

update script for removing unique key on supportedCategoricalEnums and recommendedModifierEnums #4843

51d34ec8 04/14/2015 01:02 PM Andreas Müller

add update script for hasMoreMembers #4791

4ccd7bc8 04/14/2015 12:58 PM Andreas Müller

merge trunk into 36 branch

0035631b 04/14/2015 09:48 AM Katja Luther
3a3ded31 04/13/2015 07:07 PM Andreas Müller

Create updater for cdm36 and update schema/term version

567373fc 04/13/2015 06:58 PM Andreas Müller

Add hasMoreMembers to Team, update script still missing #4791

5d4a97b9 04/01/2015 03:20 AM Andreas Müller

Fix merging of names of different types test

4094c5e2 04/01/2015 03:08 AM Andreas Müller

allow different type merging not only for reallocation of links

232dbedb 04/01/2015 02:05 AM Andreas Müller

remove onlyReallocate links as this is not yet implemented #4768

6c84a3ee 04/01/2015 01:59 AM Andreas Müller

Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between

f3e8262d 03/27/2015 10:57 PM Andreas Kohlbecker

correct handling of terms with multiple representations

b9b58fbb 03/27/2015 06:49 PM Andreas Kohlbecker

implementing better namedAreasInUse service for #3994 (Select widget to choose the filter areas for the advanced search)

a68b50d7 03/27/2015 05:24 PM Andreas Müller


3aad2f18 03/27/2015 05:21 PM Andreas Müller

first implementation of WrappedCdmDataSource #3910

5600a9cf 03/27/2015 01:54 PM Andreas Müller

minor cleanup

43133fb1 03/26/2015 01:24 PM Andreas Müller

add tests to avoid inconsistencies in recursive cdm updater calls

7607fee1 03/25/2015 06:37 PM Andreas Müller

bugfix for 34_341 Updater

1be86351 03/24/2015 11:57 AM Andreas Müller

merge validation commits r23146, r23162, r23163 into trunk

0a45363c 03/24/2015 10:42 AM edit-jenkins

[maven-release-plugin] prepare for next development iteration

f2e32cd9 03/24/2015 10:42 AM edit-jenkins

[maven-release-plugin] prepare release cdmlib-parent-3.5.0

38d72f27 03/23/2015 06:06 PM edit-jenkins

[maven-release-plugin] prepare for next development iteration

49753fdd 03/23/2015 06:06 PM edit-jenkins

[maven-release-plugin] prepare release cdmlib-commons-3.5.0

bea051c9 03/23/2015 01:15 PM Andreas Müller

fix bug in update script

70ab1592 03/20/2015 04:17 PM Andreas Müller

add listener for taxon name in determination event and run update script again

e192762e 03/20/2015 03:01 PM Andreas Müller

fix test environment for Identifier being Annotatable #4673

7aa14043 03/20/2015 02:41 PM Andreas Müller

fixing persistence tests on AgentBase.collectorTitle #4311

f35bb00a 03/20/2015 02:26 PM Andreas Müller

add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311

e22e9d11 03/20/2015 01:55 PM Andreas Müller

update named area idInVocabularies if necessary #4140

ef081a36 03/20/2015 01:12 PM Andreas Müller

make identifier annotatable #4673

aca37b0a 03/20/2015 11:34 AM Andreas Müller


134305da 03/20/2015 11:32 AM Andreas Müller

update script for orphaned taxon node removal #2341

86372594 03/20/2015 12:46 AM Andreas Müller

update cdmlib poms from 3.4.1-SNAPSHOT to 3.5.0-SNAPSHOT

782d9cc1 03/19/2015 02:29 PM Andreas Müller

merge validation2 and model 3.5 into trunk

418a2bdc 03/17/2015 11:35 AM Katja Luther

fix search for common names in editor and minor

25c90163 03/10/2015 10:53 AM Katja Luther
f973242a 03/10/2015 10:06 AM Katja Luther

for infrageneric unranked rank adding unranked
fixing bug with deletion of names and homotypicalGroups

771a2b9e 03/04/2015 02:00 PM Patrick Plitzner
  • fixed java doc
a4eb973c 02/12/2015 11:07 AM Andreas Müller


90e863de 02/06/2015 11:29 PM Andreas Müller

add amplification cache test

80ab91c0 01/24/2015 07:19 AM Andreas Müller

for testing

9d8532ab 01/24/2015 06:32 AM Andreas Müller

add taxonNode to session in countByIdentifier

58ba0a9d 01/23/2015 11:03 PM Andreas Müller

improve byIdentifer service

49f7c6b1 01/22/2015 04:47 PM Andreas Müller

missing persistence changes for findByIdentifier

e580c4ca 01/22/2015 11:40 AM Andreas Müller

latest changes for findByIdentifier service

0b9c5cf2 01/21/2015 05:31 PM Andreas Müller

improve and rename findByIdentifier service

e4afb5d7 01/21/2015 04:50 PM Andreas Müller

fix MatchMode.prepend bug

bff1beb0 01/08/2015 10:40 PM Andreas Müller

switch off validation

36fbea3e 01/08/2015 04:43 PM Andreas Müller

rename abstract class

1dff1ca8 01/08/2015 04:40 PM Andreas Müller

rename abstract class

e02ff7c5 01/08/2015 04:36 PM Andreas Müller

merge cdmlib-persistence from validation branch to trunk

97ac524a 01/08/2015 11:46 AM Andreas Müller

first tests for listByIdentifier

6a47f57b 01/07/2015 07:36 PM Andreas Müller

first untested version for findByIdentifier #4594

dcd123e3 12/15/2014 01:46 PM edit-jenkins

[maven-release-plugin] prepare for next development iteration

6ff62c66 12/15/2014 01:46 PM edit-jenkins

[maven-release-plugin] prepare release cdmlib-parent-3.4.0

1bdbfb0f 12/15/2014 12:46 PM Andreas Müller


340b3b05 12/15/2014 12:29 PM Andreas Müller

add username, groupname and GrantedAuthority deduplication #4102

46dba369 12/15/2014 11:22 AM Andreas Kohlbecker

more logging output

b9db5d67 12/11/2014 09:35 PM Patrick Plitzner
  • use labelCache instead of description for amplification labeling
3d611097 12/11/2014 09:34 PM Patrick Plitzner
  • change visibility of createTestDataSet to public
68ee041d 12/11/2014 09:32 PM Patrick Plitzner
  • change visibility of createTestDataSet to public
73518da2 12/11/2014 04:02 PM Andreas Müller

implement Amplification.labelCache generation

af44092f 12/10/2014 10:40 PM Andreas Müller

updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552

c9d7b4eb 12/10/2014 04:25 PM Patrick Plitzner

merge-update from trunk

efacf7a5 12/10/2014 03:47 PM Andreas Müller

update scripts for splitting Amplification and adding labelCache and reversecomplement

d06ba760 12/10/2014 03:27 PM Patrick Plitzner
  • added abstract method createTestData() to CdmIntegrationalTest
    • method should be used for generatin test XML data sets
    • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....
a491689c 12/09/2014 05:33 PM Andreas Müller

some bugfixes to new Amplification modelling #4541

af283637 12/09/2014 05:03 PM Patrick Plitzner

merge-update from trunk

395ccc97 12/09/2014 04:44 PM Andreas Müller

separate Amplification and #4541

8c84bc10 12/08/2014 01:27 PM Andreas Kohlbecker

bug fix

9de237d7 12/08/2014 01:27 PM Andreas Kohlbecker

CdmUpdater can run on multiple databases supplied as comma separated list

404c0036 12/04/2014 04:00 PM Patrick Plitzner
  • added service method to get descriptions which have a specimen set as describedSpecimen
    • added test which fails because the XML is loaded incorrectly
96274f18 12/04/2014 09:44 AM Patrick Plitzner
  • changed service method to retrieve the directly related objects
    • adapted tests
9f976540 12/03/2014 11:55 PM Andreas Müller

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

6571e4e5 12/03/2014 10:13 PM Andreas Müller

implement #4529
not yet ready

e850e1c8 12/03/2014 10:12 PM Andreas Müller

minor changes

ee8303fa 12/03/2014 10:09 PM Andreas Müller

remove Specimen_Sequence table from ddl

7d84de65 12/03/2014 10:08 PM Andreas Müller

add nextUpdater to 331_34 updater

01a5514b 12/03/2014 01:29 PM Andreas Müller

some fixes after trunk integration to 341branch

ec352541 12/03/2014 01:22 PM Patrick Plitzner

merge-update from trunk

ccf1f2f1 12/03/2014 10:03 AM Andreas Müller

merge PresenceTerm and AbsenceTerm #4521

b82a6bfc 12/02/2014 09:55 AM Patrick Plitzner
  • added DISTINCT to HQL query for associated taxa
    • created and used XML data source in occurrence service test
06d8cd12 12/01/2014 10:24 AM Patrick Plitzner
  • added occurrence service methods to retrieve all taxa that are associated with a specimen:
    • via IndividualsAssociation
    • via TypeDesignation
    • added test
fbf1cec6 11/27/2014 01:50 PM Andreas Müller


fdb9cd4c 11/26/2014 03:31 PM Patrick Plitzner
  • added TODO comment
7e9949c5 11/26/2014 12:06 PM Patrick Plitzner
  • removed unused code
a6e9cd03 11/26/2014 12:06 PM Patrick Plitzner
  • implemented service method (and test for it) to get all taxa associated with a single specimen
aebfd8da 11/26/2014 09:53 AM Patrick Plitzner
  • added listAssociatedTaxa() method to occurrence service (non functional)
fa927d2c 11/21/2014 03:36 PM Andreas Kohlbecker


502ea305 11/21/2014 02:21 PM Andreas Müller

Add institution to DerivationEvent and Amplification

0e660e76 11/21/2014 01:55 PM Andreas Müller

add DnaMarker to Primer #4470

bbe6519f 11/21/2014 10:38 AM Andreas Müller

fix bug, add OrederedTerm to hibernate cfg

710c18d5 11/21/2014 10:16 AM Andreas Müller

add DNA Quality Type vocabulary

0f8d094a 11/10/2014 09:49 AM Katja Luther

changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor

5b62196b 10/28/2014 02:09 PM Katja Luther

fix #4450

8e681fe5 10/23/2014 01:44 PM Andreas Müller

remove NOT NULL on OriginalSourceType_AUD.sourceType on existing data #4445

2ca78fa6 10/22/2014 06:54 PM Andreas Müller

last update to schema updater 34.

3e9470c3 10/22/2014 04:51 PM Andreas Müller

fix uuid as UniqueKey problem

9f86c47d 10/22/2014 01:28 AM Andreas Müller

update fullCoverageDataGenerator