EDIT

ref #8062 fix NPE in TaxonGraphTest

ref #8062 first implementation to delete default preferences (only for cdmlib predicates)

ref #8064 ref #7648 autocreation of missing default secRef value in cdm preference model.taxonGraph.secRefUuid/

fix #8064 fixing NPE in AbstractHibernateTaxonGraphProcessor.assureSingleTaxon() - taxa may be missing a sec ref

minor

remove generic references from result for inReference selection

cleanup

ref #7972 FirstdataInserter adding ROLE_REMOTING to the editor groups

ref #7903: TaxonNodeDtoNaturalComparator needs to implement Serializable

fixing wrong boolean operator combination for Restrictions with operator AND_NOT

code cleaning

ref #7939: add oderInderComnparator and use it in taxonnodeDtoRankAndNameComparator

Dto classes for distribution editor

ref #7755: provide all data for specimen pages

ref #7932 first implementation of PreferenceResolver and some adaption to PreferenceService API.

• Correct handling of subtree subjects still open.
• Also creation of user defined subjects still open.

cleanup

add Identifier to CdmPermissionClass

fix #7915 move datePublished to subinterface IWithAuthorAndDate, remove from IJournal and IPrintSeries this way

ref #7887 Add "parent" DTOs to TermDto

ref #7887 Refactor TermDto usage

ref #7887 Remove getParent()

ref #7887 Implement term service methods based on DTOs

ref #7829, ref #7800 improve nom. ref. matcher (also changes the result type => needs adaptation in client Apps)

revert: Add series parsing with letters (test) - all unwanted commits

Add series parsing with letters (test)

ref #7884 ref #7890 fixing NPE in name controllers

ref #7884 ref #7890 fixing LIE in name controllers regarding name relations

Updating develop poms back to pre merge state

updating develop poms to master versions to avoid merge conflicts

updating poms for 5.5.0-SNAPSHOT development

ref #7831 using uuids in findTaxonNameParts() methods as name exclude filter

ref #7791 adding rank order index to TaxonGraphNodeDTO

fix #7834 findInTaxonGraph implemented for Registrations with RegistrationDTOController endpoint

ref #7831 adding name exlude filter to TaxonNamePartsFilter

ref #7648 fixing bugs related to single taxa per graph and updating rels from lower ranks, with testcase

ref #7799 compute author caches in deduplicationHelper

ref #7648 adding links to the ticket as preliminary rudimentary documentation

ref #7709 adding missing @CdmHibernateListener config annotation to allow activating the TaxonGraphHibernateListener bean

cleanup

ref #7648 free configurable TaxonGraphHibernateListener ready

ref #7648 moving TaxonGraphHibernateListener and related classes into cdmlib-service

ref #7648 TaxonGraphHibernateListener as Spring bean configured via the CdmHibernateListenerConfiguration

commenting createTestDataSet() @Test annotation

ref #7648 automatic management of lower ranked names in the taxon graph

Merge branch 'feature/#7648' into develop

• TaxonGraphDao
• TaxonGraphController
• TaxonGraphService
• TaxonGraphDTO
• TaxonGraphHibernateListener and processor
• tests

ref #7648 fixing problems in TaxonGraphTest

ref #7791 TaxonGraphDao supressing Names associated with Registrations where the status is not PUBLISHED

ref #7648 moving taxongraph methods from taxonDao to taxonGraphDao

ref #7791 TaxonGraphNodeDTO with rank labels

ref #7648 more pulling up into AbstractHibernateTaxonGraphProcessor

ref #7648 common base class AbstractHibernateTaxonGraphProcessor to deduplicate TaxonGraph methods

ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments

ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments

ref #7648 solving session corruption problems in test suite for TaxonGraphHibernateListenerTest

ref #7648 fixing inconsistency in test data and improving logging

ref #7791 using name.titleCache as title for TaxonGraphNodeDTO

adapt CdmPermissionClass

ref #7648 correct handling existing taxa without secReference

ref #7648 introducing CdmPreferenceLookup for cached access to the CdmProperty with predicate 'TaxonGraphSecRefUuid' and others

• using this Preference in TaxonGraphDaoHibernateImpl and TaxonGraphBeforeTransactionCompleteProcess
• adapting tests accordingly...

ref #7648 cleaning up and attempting to fix TaxonGraphService test setup

ref #7648 all TaxonGraph updating done in a BeforeTransactionCompletionProcess implementation - TaxonGraphHibernateListener is working now

ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGraphHibernateListener

ref #7648 TaxonGraphService complete with full set of tests

ref #7345: fix dao method to get entities with special marker and pattern in titleCache

ref #7345: add dao and service methods to get UuidAndTitleCache marked with a special markerType

ref #7648 initial implementation of TaxonGraphService with tests and TaxonGraphObserver

fix #7795 untilis xml DataSets can optionally be created without "[NULL]" values

minor issue with return type of listToTaxonRelationships() fixed

ref #7783 TaxonNamePart with uuid & assuring registrations have an identifier when saved

Updating develop poms back to pre merge state

updating develop poms to master versions to avoid merge conflicts

updating poms for 5.4.0-SNAPSHOT development

ref #7745 childNodesOf implemented

cleanup

ref #7745 add subtree parameter to freetext search methods

ref #7745 fix bug in queries with subtree, some first test and cleanup

ref #7745 fix syntax for node.treeindex in query

ref #7745 subtree filter to taxon search (add missing parameter for queries)

ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)

fix #7756 allowig direction to be null again

ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes

fix bugs in abcd import

avoiding too extensive logging by commenting all hardcoded loglevels

cleanup

ref #7702 avoiding NPE in TargetEntityStates when pervious state is null

ref #7664 adapt return type for many methods with defined typification

Updating develop poms back to pre merge state

updating develop poms to master versions to avoid merge conflicts

updating poms for 5.3.0-SNAPSHOT development

ref #6682 try to fix failing query in TaxonDao

ref #6682 try to fix failing query in TaxonDao

ref #6682 add types and deduplicateMisapplications parameter to web service

revert commit ff21181c

ref #6682 further fixes for taxon relationship service

minor

Merge branch 'develop' into feature/specimenPortal

ref #7590 fixing join types for restriction operations

mend

ref #7599: minor

ref #7590 documentation

ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators