EDIT

Try to fix pattern issue in taxon uuidAndTitleCache search

Simplify taxonDao

Further develop the CDM preferences #3958

minor

revert last commit

minor

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

Fix empty protected titlecaches #5763

Remove bidirectionality for supplemental data #5743

Clean up AnnotationDao and AnnotationService

Update test data for xxxObj_type #3701

Adapt AnnotationDaoTest #3701

Adapt table and column names to hibernate 5 naming strategy #5369

... and some other changes to table/attribute names

Add IntextReference to related objects test classes

Javadoc

Fix deduplication problem with list order #5652

Add separator after nom status in taxon titleCache #5576

resolving conflicts after merge of ticket_4716 into develop

Cleanup description generics (related to #5357)

organizing imports

disabling unnecesary component scan

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Adapt cdmlib-persistence to new testing architecture #5370

Upgrade to hibernate 5 with persistence tests running #4716

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

revert chamges in MatchMode

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

fixing #4878

Add test to ensure bean initialization works on hibernate proxies #5077

minor

fixing getUUIDAndTitleCache for Classification and excluding taxa

Fully remove old vocabulary.byClass methods #3843

Remove listEmpty method from TermVocabularyDao #3843

Add vocabulary list method by term types #3843

Adapt listeners and tests to new pre-insert strategy #5066

#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods

Update test database schema to allow null for consensus sequence

Update test database schema to allow null for consensus sequence

fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage

Increase reference titlecache in test DBs

whitespace

Fix UniqueKey issue for sequence ciations

Add to clear DB script

#5056 Refactored 'save' call to return saved entity

Fix updateSortindex test for TaxonNode javassist objects

Solve merge conflict for CdmTransactionalIntegrationTest

Cleanup dao test classes

Rename remaining occurrences of xxxAuthorTeam #4968

Rename remaining occurrences of combinationAuthorTeam and
basionymAuthorTeam in code and other files

Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968

Fix ignored test in TaxonDaoHibernateImplTest #2815

Fix ignored test in DescriptionElementDao #2815

Remaining tasks

• add @Audited to all type properties
• add taxonNodeComparator for rank and alphabetical orderedVocabularyDao
• change delete() methods arguments to UUIDs

Merge branch 'RankSpecificRootNodes-1'

Fixing test for listRankSpecificRootNodes

fix listRankSpecificRootNodes behavior for ranks in between and some
additional tests

Merge branch 'RankSpecificRootNodes-1'

some additional test for #2778

add some tests for rankSpecificRootNodes, related to #2778

cleanup dataset

fix testdata for #2778

fixing missing LanguageString in test dataset for #2778. However, test
still fails.

fix #4976 Titlecache for new vocabularies not filled correctly

merging test file from remote master

• added missing table column to test DB

implementing test to reproduce issue #2778 - the test runs succesfully, so the issue is already solved

providing a example implementation of createTestDataSet()

rename authorTeam -> authorship #4332 for name authors

merge trunk into 3.6 branch

Move FullCoverageDataGenerator from test to real, to avoid dependency problems.

adapt FullCoverageData method

fix test and add factory method #3583

some cleanup, renaming and a test for TaxonNodeAgentRelation #3583

more getters/adders, update script, vocabulary and test vocabulary for TaxonNodeAgentRelation #3583

first implementation of TaxonNodeAgentRelation #3583

merging trunk into 3.6 branche

adding test for term titleCache creation #3148

moving UuidAndTitleCache from model to persistence. #4799

Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841

Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841

fix tests for model 3.6

merge trunk into model change 3.6

try to fix ConcurrentModificationException in ValidationExcecutorTest #4851

Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing

implement datasource type inference for external datasources: #3910

minor

additing titleCache to administrative area

fix bug in TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2

Add hasMoreMembers to Team, update script still missing #4791

Fix merging of names of different types test

remove onlyReallocate links as this is not yet implemented #4768

Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between

correct handling of terms with multiple representations

implementing better namedAreasInUse service for #3994 (Select widget to choose the filter areas for the advanced search)

add tests to avoid inconsistencies in recursive cdm updater calls

merge validation commits r23146, r23162, r23163 into trunk

add listener for taxon name in determination event and run update script again

fix test environment for Identifier being Annotatable #4673

fixing persistence tests on AgentBase.collectorTitle #4311