EDIT

Adapt AnnotationDaoTest #3701

Adapt table and column names to hibernate 5 naming strategy #5369

... and some other changes to table/attribute names

disabling unnecesary component scan

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Adapt cdmlib-persistence to new testing architecture #5370

Upgrade to hibernate 5 with persistence tests running #4716

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

Add test to ensure bean initialization works on hibernate proxies #5077

Adapt listeners and tests to new pre-insert strategy #5066

Update test database schema to allow null for consensus sequence

Update test database schema to allow null for consensus sequence

Increase reference titlecache in test DBs

Fix UniqueKey issue for sequence ciations

Add to clear DB script

Fix updateSortindex test for TaxonNode javassist objects

Rename remaining occurrences of xxxAuthorTeam #4968

Rename remaining occurrences of combinationAuthorTeam and
basionymAuthorTeam in code and other files

Fix ignored test in TaxonDaoHibernateImplTest #2815

Fix ignored test in DescriptionElementDao #2815

Remaining tasks

• add @Audited to all type properties
• add taxonNodeComparator for rank and alphabetical orderedVocabularyDao
• change delete() methods arguments to UUIDs

Merge branch 'RankSpecificRootNodes-1'

fix listRankSpecificRootNodes behavior for ranks in between and some
additional tests

Merge branch 'RankSpecificRootNodes-1'

some additional test for #2778

add some tests for rankSpecificRootNodes, related to #2778

cleanup dataset

fix testdata for #2778

fixing missing LanguageString in test dataset for #2778. However, test
still fails.

merging test file from remote master

• added missing table column to test DB

implementing test to reproduce issue #2778 - the test runs succesfully, so the issue is already solved

rename authorTeam -> authorship #4332 for name authors

more getters/adders, update script, vocabulary and test vocabulary for TaxonNodeAgentRelation #3583

first implementation of TaxonNodeAgentRelation #3583

Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841

Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841

fix tests for model 3.6

merge trunk into model change 3.6

Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing

additing titleCache to administrative area

fix bug in TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2

Add hasMoreMembers to Team, update script still missing #4791

correct handling of terms with multiple representations

implementing better namedAreasInUse service for #3994 (Select widget to choose the filter areas for the advanced search)

merge validation commits r23146, r23162, r23163 into trunk

fix test environment for Identifier being Annotatable #4673

fixing persistence tests on AgentBase.collectorTitle #4311

add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311

merge validation2 and model 3.5 into trunk

merge cdmlib-persistence from validation branch to trunk

first tests for listByIdentifier

some bugfixes to new Amplification modelling #4541

separate Amplification and AmplificationResult.java #4541

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

remove Specimen_Sequence table from ddl

merge-update from trunk

merge PresenceTerm and AbsenceTerm #4521

Add institution to DerivationEvent and Amplification

add DnaMarker to Primer #4470

add DNA Quality Type vocabulary

further changes to DnaQuality #4434 and update script for ValidationFramework alpha version

make primer.sequence a SequenceString #4139

add i18n description for Classification. #4428

Geo and time scope for Classifications #3699

first implementation for DnaQuality #4434

rename Reference.authorTeam -> authorship #4432

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

rename Reference.authorTeam -> authorship #4432

remove series from Reference #4293

add IdentifierType Vocabulary

fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers

adapt tests to 3.4

merge-update from trunk

fix for last commit

create new vocabulary for MediaSpecimenKindOfUnit, move Detail image and Specimen scan from old to new vocabulary and create new terms Living plant photo and Artwork #4269

additional test for sortindex handling #4200

test for #4200

add original label info to derived unit #4218

adapt the service method loadChildNodesOfTaxonNode
with param recursive choose whether you get only the children of the node or the children of the children ...

implementing dao method listAcceptedTaxaFor, for #4112

add NomStatus vocabulary for ICZN #4085

remove uri from feature tree #3519

update test scripts for unknownData flag #2975

rootNode adaption for classification

delete terms

fix test data

merging delete functionality into trunk

moving preferences into new package and some minor changes

merge trunk into v3.3 branch

some better implementation for CdmPreferences dao including some tests #3555

some bugfixes for TaxonNode sorting #3508

rename materialMethodTerm -> definedMaterialOrMethod

final implementation of MaterialOrMethodEvent, Cloning, PreservationMethod, ... #3360

Change WaterbodyOrCountry name to Country #3700

update waterbody uuids in class, csv and TermsDataSet

split Waterbody and Country vocabulary and make waterbody an ordinary NamedArea #3700

Chloroplast DNA Markers and some more Eukaryotes #3591

persist Sequence direction via enum key #3686

change table name Rights->RightsInfo #2945