EDIT

Yeahhhh! I got rid of this nasty bug in PolytomousKeyDaoHibernateImplTest

splitting PolytomousKeyNodeService from PolytomousKeyService & more methods for IdentificationKeyService

first tests for list find methods for user and group services (#2283 and #2284).

bugfix for failing test in PolytomousKeyDaoHibernateImplTest (added excluded, unplaced and taxonstatusunknown)

bugfix for failing test in PolytomousKeyDaoHibernateImplTest (added doubful and usenamecache values)

bugfix for failing test in PolytomousKeyDaoHibernateImplTest (added protectedTitleCache value)

bugfix for descriptionBase.clone #2234

added a test case for polytomous keys

merge 3.0.2 to trunk

added barcode to derived unit #1689

added unplaced and excluded attribute to Taxon

re-integrating branches/cdmlib/oai-pmh up to revision 10059

merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk

Merging cdmlib-persistence to trunk; pesi. Merge rev 8083-8429.

merging PESI brach into trunk

merge cate-development2 branch with trunk

Added public T replace(T x, T y) to ICdmEntityDao, implementation and tests

Added an IIdentificationKeyDao to query across all identification key types

Added merge(T t, LockMode lockmode) and refresh(T t, LockMode lockmode) to allow developers to bypass the session & second-level cache (useful in some instances)

Refactored free text search to re-use the same code for all identifiable entities. Switched to StandardAnalyzer to include indexing of numbers. Removed redundant code from taxonDao.delete() method (as included entities deleted using hibernate's cascade method)

Refactored methods in VersionableDaoBase etc + added Query-By-Example for CdmEntityDaoBase

now updated is set and all tests are ok.

revert the model changes...

rightsterm -> rightstype ticket #1306

test for getTaxaByCommonName added

Added methods and tests to recover changes to data

Refactored OrderHint and added RandomOrder, plus a couple of small bug fixes in VersionableDaoBase

Merged in changes from cate-development branch and upgraded to spring 3.0.0.RC1

bugfix in team title cache generator and berlin model export

bugfix for cacheStrategyGeneratorTest

changes to datasource and tests for persist agents

bugfix for title cache(2)

bugfixing for modelchanges and adaptation of import routines

minor

changes for renaming referencebase table name in persistence, service & io

Intensive model change for referenceBase and subclass, smaller model changes for taxonBase and marker

fix tests in persistence after model change

#445: Added missing term vocabularies

#445: Added missing term vocabularies
#921: Added setDefaultTerms methods
Added inferred and potential combination synonym relationship types for Fauna Europaea

Implemented Grouping Criteria method for ICdmEntityDao, including group by count and group by year / month / day for dateTime fields

last bugfixes for tests in persistence

further test bugfixes

bugfixes on dataset.dtd

bug fixing in Test DataSet etc.

protected title cache = false for test files in persistence

Impact of new model changes: new classes and renaming

Merge for cdmlib-persistence and bugfix in TaxonDaoHibernateImplTest

ReferenceSystem in persistence

refactoring of ICdmGenericDao.getReferencingCdmBases()

dataportal release v2.0

new dao methods and cleaning up ITaxonDao

test data

Added methods concerning taxonomic tree to taxon service.

Fixed testDelete

minimum base web services for CDM Portal v2.0

TaxonomicTree implementation (persistence)

Made the images in DescriptionElementBase ordered (java.util.List) and changed Media.mediaCreated to a joda DateTime

updated test data such that it should pass on different machines

Nullpointer exception in TermInitializer and adapted termsDataSet-with_auditing_info.xml

Removed code which introduced horrible performance problems and phantom commits.

Corrected and added to tests

Updated tests to reflect the new unique uuid constraint, corrected the CacheStrategyGenerator listener to correctly add updatedBy / createdBy metadata on saveOrUpdate events, corrected a couple of DAO methods, and added merge(T t) to ICdmEntityDao to allow the persisting of detached objects

Fixed name/specimen type designation status mapping

Activated loading of NameTypeDesignationStatus terms. Fixed unit test.

Refactored ISearchableDao to make it more generic, then added it and implementations to daos for Agents, References and Media

Updated TaxonDaoHibernateImplTest.testDelete()

#724: Update taxonomic children count and taxonomic parent cache when deleting a taxon.

Lots of changes, including,
adding List orderHints, List propertyPaths to dao methods
New MarkerDao & impl
Expanded test coverage of beanintialization and cache strategy generator configuration

Adjusted tests because of adding imageGallery flag to DescriptionBase

TypeDesignationStatus renamed to SpecimenTypeDesignationStatus

bugfix teamMembers as lists (persistence)

model change for references (publishers) and taxon status

make cache generator work

Minor problems discovered whilst refactoring CATE:
Corrections to User / Group / Authority impl
Changes due to upgrade of hibernate-search

delete dataset.xsd and PUBLIC.xsd in persistence layer

Changes related to refactoring of Auditing info, including auto-population of createdBy and updatedBy fields from the SecurityContext (#630)

Committing large number of changes relating to versioning implementation (#108)

Plugin 2.00.00.14 - with debug messages to investigate term initializing problems

cdmlib-persistence -> new appContext configuration and fixes in tests

Filtered table DB_VERSION from comparison

Major changes to the cdmlib default term loading and initialization, plus free-text search of Taxa (by name) and DescriptionElementBase elements as part of #476

Implemented generic user & group dao's and ported additional methods for querying TaxonName related information as part of #466

Implemented methods to getRights and getSources in IIdentifiableDaoBase (#466)

Added IAnnotationDao & implementation, and IAnnotatableDao & implementation, as part of #466

Added methods for querying for identification keys (part of #467)

More work on #466, in particular on DefinedTermDao, AgentDao, TermVocabularyDao, and DescriptionDao.

Partially implemented new methods for DescriptionDaoHibernateImpl, but need to change mapping of DescriptionBase -> DescriptionElementBase to bidirectional first

Implemented new methods required for CATE in ITaxonDao and implementation, including tests

Refactored IdentifiableDaoBaseTest to use unitils / dbunit. Substituted dbunit-ized version of TaxonDaoHibernateImplTest for original.

Refactored IdentifiableDaoBaseTest to use unitils / dbunit. Substituted dbunit-ized version of TaxonDaoHibernateImplTest for original.

refactored DefinedTermDaoImplTest to use unitils / dbunit

Implemented another integration test

Implemented first pass unitils / dbunit integration test (in response to #243)