EDIT

Adapt AnnotationDaoTest #3701

Add IntextReference to related objects test classes

Javadoc

Fix deduplication problem with list order #5652

Add separator after nom status in taxon titleCache #5576

resolving conflicts after merge of ticket_4716 into develop

Cleanup description generics (related to #5357)

organizing imports

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Adapt cdmlib-persistence to new testing architecture #5370

Upgrade to hibernate 5 with persistence tests running #4716

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

revert chamges in MatchMode

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

fixing #4878

Add test to ensure bean initialization works on hibernate proxies #5077

minor

fixing getUUIDAndTitleCache for Classification and excluding taxa

Fully remove old vocabulary.byClass methods #3843

Remove listEmpty method from TermVocabularyDao #3843

Add vocabulary list method by term types #3843

#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods

fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage

whitespace

#5056 Refactored 'save' call to return saved entity

Fix updateSortindex test for TaxonNode javassist objects

Solve merge conflict for CdmTransactionalIntegrationTest

Cleanup dao test classes

Rename remaining occurrences of xxxAuthorTeam #4968

Rename remaining occurrences of combinationAuthorTeam and
basionymAuthorTeam in code and other files

Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968

Fix ignored test in TaxonDaoHibernateImplTest #2815

Fix ignored test in DescriptionElementDao #2815

Remaining tasks

Fixing test for listRankSpecificRootNodes

fix listRankSpecificRootNodes behavior for ranks in between and some
additional tests

some additional test for #2778

add some tests for rankSpecificRootNodes, related to #2778

fix testdata for #2778

fix #4976 Titlecache for new vocabularies not filled correctly

implementing test to reproduce issue #2778 - the test runs succesfully, so the issue is already solved

providing a example implementation of createTestDataSet()

merge trunk into 3.6 branch

Move FullCoverageDataGenerator from test to real, to avoid dependency problems.

adapt FullCoverageData method

fix test and add factory method #3583

some cleanup, renaming and a test for TaxonNodeAgentRelation #3583

more getters/adders, update script, vocabulary and test vocabulary for TaxonNodeAgentRelation #3583

merging trunk into 3.6 branche

adding test for term titleCache creation #3148

moving UuidAndTitleCache from model to persistence. #4799

merge trunk into model change 3.6

try to fix ConcurrentModificationException in ValidationExcecutorTest #4851

implement datasource type inference for external datasources: #3910

minor

fix bug in TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2

Add hasMoreMembers to Team, update script still missing #4791

Fix merging of names of different types test

remove onlyReallocate links as this is not yet implemented #4768

Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between

correct handling of terms with multiple representations

implementing better namedAreasInUse service for #3994 (Select widget to choose the filter areas for the advanced search)

add tests to avoid inconsistencies in recursive cdm updater calls

merge validation commits r23146, r23162, r23163 into trunk

add listener for taxon name in determination event and run update script again

fixing persistence tests on AgentBase.collectorTitle #4311

merge validation2 and model 3.5 into trunk

minor

add amplification cache test

rename abstract class

merge cdmlib-persistence from validation branch to trunk

• change visibility of createTestDataSet to public

• change visibility of createTestDataSet to public

merge-update from trunk

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

separate Amplification and AmplificationResult.java #4541

implement SingleReadAlignment.java #4529
not yet ready

merge-update from trunk

merge PresenceTerm and AbsenceTerm #4521

minor

Add institution to DerivationEvent and Amplification

changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor

fix #4450

update fullCoverageDataGenerator

integrate latest changes to branche 3.4

latest fullCoverDaGet

remove view from fullCoveragedatagen

merge-update from trunk

final version of FullCoverageDataGenerator for v3.3

minor

latest updates to FullCoverageDataGenerator

• adapted to cdm3.4 changes

merge-update from trunk

improve FullCoverageDataGenerator

allow saving FullDataGenerator data through API (preliminary)

make primer.sequence a SequenceString #4139

Make Contact URL an url #3920

rename Reference.authorTeam -> authorship #4432

rename Reference.authorTeam -> authorship #4432