EDIT

Try to fix pattern issue in taxon uuidAndTitleCache search

Simplify taxonDao

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Upgrade to hibernate 5 with persistence tests running #4716

revert chamges in MatchMode

fixing #4878

Add test to ensure bean initialization works on hibernate proxies #5077

fixing getUUIDAndTitleCache for Classification and excluding taxa

fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage

Fix updateSortindex test for TaxonNode javassist objects

Cleanup dao test classes

Fix ignored test in TaxonDaoHibernateImplTest #2815

Fixing test for listRankSpecificRootNodes

fix listRankSpecificRootNodes behavior for ranks in between and some
additional tests

some additional test for #2778

add some tests for rankSpecificRootNodes, related to #2778

fix testdata for #2778

implementing test to reproduce issue #2778 - the test runs succesfully, so the issue is already solved

fix test and add factory method #3583

some cleanup, renaming and a test for TaxonNodeAgentRelation #3583

moving UuidAndTitleCache from model to persistence. #4799

fix bug in TaxonNodeDaoHibernateImplTest.testSortindexForJavassist2

• change visibility of createTestDataSet to public

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor

fix #4450

additional test for sortindex handling #4200

minor

test for #4200

fixing #4273 (java.lang.ClassCastException in TaxonDaoHibernateImpl.countTaxaByCommonName() breaks taxon search) and most probably also other CommonName search related tickets

first development for the export filter

better use of generics in service layer and persistence list methods

adapt the service method loadChildNodesOfTaxonNode
with param recursive choose whether you get only the children of the node or the children of the children ...

Changed limits to INTEGER, so it is possible to nullify these parameters if needed

*added Test for service method: getTaxonOfAcceptedTaxaByClassification and countTaxonOfAcceptedTaxaByClassification
*fixed SQL Statement so it works with H2 DB

performance improvement for listChildNodes of a taxon

adating test to modified number of taxa

implementing dao method listAcceptedTaxaFor, for #4112

removing old TODO

rootNode adaption for classification

delete terms

fixed problem with deletion of nodes.

merging delete functionality into trunk

some bugfixes for TaxonNode sorting #3508

implement sortIndex for TaxonNode and remove usedSynonym from addChildNode methods (#3508)

Hibernate 4 migration. All test running except for SDDImport (Out of memory)

Allow Locus to be loaded by javassist (fixing #3340)

modifying FirstDataInserter for existing tests

ready to be reintegrated into trunk

fixing some test, but also ignoring some since i am running out of time - sorry for that

move inferred synonyms to service layer

tabs to spaces

remove imports

Merging r13268 through r14040 from trunk/cdmlib into branches/cdmlib-unitils3

fixing again the search for misapplied names. adapting the tests

test cases commented

Ticket #2648

more adapting xml datasources to unitils 3.3

ignoring test

test modified to reproduce bug in #2648 (search for misapplied names implemented)

add a test for a search only for misapplied names

fix for #2648

test to reproduce bug in #2648 (search for misapplied names implemented)

whitespace and minor changes

fixing bug associated with getTaxaByCommonName(); benchmarking taxa by common name hql vs lucene

hibernate fulltext search & refactoring getTaxaByName*() method headers

countTaxaByName harmonized with find method (replace Class <? extends TaxonBase> parameter with boolean parameters for synonyms, taxa and misapplied names)

changes for bugs and problems in search for misapplied names (#2648)

adapt the search to be able to find misapplied names: to include misapplied names use the new configurator attribute doIncludeMisappliedNames

upgrading unitils to v3.2 (tests not yet working)

testGetTaxaByNameForEditor() added

minor changes

replace deprecated methods with new ones #2176

merge 3.0.2 to trunk

sdd import matches descriptions to existing taxa

merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk

ignoring test TaxonDaoHibernateImplTest.java

Merging cdmlib-persistence to trunk; pesi. Merge rev 8083-8429.

merging PESI brach into trunk

bugfix for TaxonNode.getParent == null

#1390

Refactored free text search to re-use the same code for all identifiable entities. Switched to StandardAnalyzer to include indexing of numbers. Removed redundant code from taxonDao.delete() method (as included entities deleted using hibernate's cascade method)

minor

revert the model changes...

rightsterm -> rightstype ticket #1306

test for getTaxaByCommonName added

Added methods and tests to recover changes to data

licence comment added

merged from branches/cdmlib/2.2 7238-7345 into trunk

Merged in changes from cate-development branch and upgraded to spring 3.0.0.RC1

Intensive model change for referenceBase and subclass, smaller model changes for taxonBase and marker

adding and using yourkit profiler controller

#445: Added missing term vocabularies
#921: Added setDefaultTerms methods
Added inferred and potential combination synonym relationship types for Fauna Europaea