EDIT

Adapt AnnotationDaoTest #3701

Add IntextReference to related objects test classes

Javadoc

Fix deduplication problem with list order #5652

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

minor

Fully remove old vocabulary.byClass methods #3843

Remove listEmpty method from TermVocabularyDao #3843

Add vocabulary list method by term types #3843

Cleanup dao test classes

Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968

fix #4976 Titlecache for new vocabularies not filled correctly

adding test for term titleCache creation #3148

Fix merging of names of different types test

remove onlyReallocate links as this is not yet implemented #4768

Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between

• change visibility of createTestDataSet to public

merge-update from trunk

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

merge PresenceTerm and AbsenceTerm #4521

Make Contact URL an url #3920

rename Reference.authorTeam -> authorship #4432

rename Reference.authorTeam -> authorship #4432

better use of generics in service layer and persistence list methods

remove test method call

refactor term loading for performance

moving preferences into new package and some minor changes

some better implementation for CdmPreferences dao including some tests #3555

partial implementation of CDM preferences (dao, service and enums): #3555

final implementation of MaterialOrMethodEvent, Cloning, PreservationMethod, ... #3360

Change WaterbodyOrCountry name to Country #3700

split Waterbody and Country vocabulary and make waterbody an ordinary NamedArea #3700

Update script for termtype and some other, remove InstitutionType and COntinent, update idInVocabulary, ...

first implementation of new molecular package #3360

Rename RightsTerm -> RightsType #1306

remove ReferencedMediaBase and Figure, let PhylogeneticTree inherit from Media, remove citation and microcitation columns from DB

rename FieldObservation -> FieldUnit #3351

adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.

Remove GenBankAccession class, Spatium for EN_DASH and some minor stuff for v3.3

exchange modifier classes by DefinedTerm, add termtype to csv files, make term loader required constructor private

remove TdwgArea and add termType and idInVocabulary (#2998, #3478, #3479, #3539) in persistence

update factory methods for original sources #1549

merge trunk to hibernate4

Updated existing tests to add '[]' around CRUD values

Hibernate 4 migration. All test running except for SDDImport (Out of memory)

controller method for listByAssociatedTaxon(); default OrderHints; method harmonization in DAO classes

simpler and more predictable persistence/query/MatchMode.java

fixing testing context in persitence and fixing test

reverting last commit - will be committed again later

merging in git branch 'methodSecurityExpressions' and resolving conflict in SecurityTest.java

security stuff

Merging r13268 through r14040 from trunk/cdmlib into branches/cdmlib-unitils3

all tests running sucessful, however unitil is still patched to not use jdbc batch mode

h2 as test alternative database & potentially fixing #2100 (Fix tests not running in suite)

adapting xml datasources to unitils 3.3

fixing transaction problems

add includeEmpty vocs (#2704)

implement getTermVocabulariesByTermClasses also for subclasses (#2704)

remove deprecated call for description.setAddSource

change name of ReferencedMedia to ReferencedMediaBase (#2381)

countByTitle() method for IIdentifiableService

further UserDao tests

first tests for list find methods for user and group services (#2283 and #2284).

minor

Reverting the RightsTerm -> RightsType change (see #1306). This is a model change and needs updates to the schema. We will transfer this into a branch.

comment syso's

remove duplicate for Argentina

merge 3.0.2 to trunk

merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk

merge cate-development2 branch with trunk

minor

Updated ICdmEntityDao replace(T x, T y) and refresh(T t, LockMode lockMode, List propertyPaths) and added methods to IAnnotationDao

Refactored methods in VersionableDaoBase etc + added Query-By-Example for CdmEntityDaoBase

revert the model changes...

rightsterm -> rightstype ticket #1306

refactoring the references for imports...

Refactored OrderHint and added RandomOrder, plus a couple of small bug fixes in VersionableDaoBase

licence comment added

Deleted Keyword class

deleting BibtexEntryType

Intensive model change for referenceBase and subclass, smaller model changes for taxonBase and marker

Impact of new model changes: new classes and renaming

updates for match strategy in persistence

Matching in persistence

matching in persistence

Merge for cdmlib-persistence and bugfix in TaxonDaoHibernateImplTest

refactoring of ICdmGenericDao.getReferencingCdmBases()

reimplemented GenericDao.getAllClasses

minor

Corrected and added to tests

Updated tests to reflect the new unique uuid constraint, corrected the CacheStrategyGenerator listener to correctly add updatedBy / createdBy metadata on saveOrUpdate events, corrected a couple of DAO methods, and added merge(T t) to ICdmEntityDao to allow the persisting of detached objects

Refactored ISearchableDao to make it more generic, then added it and implementations to daos for Agents, References and Media

Lots of changes, including,
adding List orderHints, List propertyPaths to dao methods
New MarkerDao & impl
Expanded test coverage of beanintialization and cache strategy generator configuration

minor

minor

make cache generator work