ref #7648 TaxonGraphService complete with full set of tests

ref #7648 initial implementation of TaxonGraphService with tests and TaxonGraphObserver

minor issue with return type of listToTaxonRelationships() fixed

ref #7783 TaxonNamePart with uuid & assuring registrations have an identifier when saved

ref #7745 childNodesOf implemented

cleanup

ref #7745 fix bug in queries with subtree, some first test and cleanup

ref #7745 fix syntax for node.treeindex in query

ref #7745 subtree filter to taxon search (add missing parameter for queries)

ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)

fix #7756 allowig direction to be null again

ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes

fix bugs in abcd import

cleanup

ref #7702 avoiding NPE in TargetEntityStates when pervious state is null

ref #7664 adapt return type for many methods with defined typification

ref #6682 try to fix failing query in TaxonDao

ref #6682 try to fix failing query in TaxonDao

ref #6682 add types and deduplicateMisapplications parameter to web service

revert commit ff21181c

ref #6682 further fixes for taxon relationship service

minor

Merge branch 'develop' into feature/specimenPortal

ref #7590 fixing join types for restriction operations

mend

ref #7599: minor

ref #7590 documentation

ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators

ref #7590 implementing AND and OR operator for restrictions and harmonizing code

first implementation for specimen page with DTOs

adding new SpecimenOrObservationType and smaller changes

ref #7573 adding AGTENTBASE to CdmPermissionClass and creating generic RoleProber

fix #7527 making page by parameter with criteria and restrictions available in the service layer

Merge branch 'develop' into aggregation

Conflicts:¶

cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java¶

ref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates

ref #7531 RegistrationVoter evaluates previous state on Registration.status changes

ref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permission voting process

renaming variable

TeamAutoInitializer only loads members for Teams

cleanup

ref #7530 3 families and dianthus import (WFO Access Import)

cleanup

ref #7525 ref #7523 allowing to use Restriction as exclude filter

ref #7525 restoring all previously removed Criteria methods

Revert "ref #7527 renaming CdmEntityDaoBase.ByParam methods"

This reverts commit 13ec97dbc071864563698e422a15ad725e28a55b.

ref #7527 renaming CdmEntityDaoBase.ByParam methods

fix #7525 replacing Criteria lists by cdm Restrictions in CdmEntityDaoBase.*ByTitle() methods

ref #7508 fix lazy loading exception for inverseRepresentations

ref #7508 fix lazy loading exception for inverseRepresentations

cleanup

ref #7509 Implement service method for common parent taxon node + test

ref #7508 further fix term representation web service

cleanup

cleanup

cleanup

remove harmonization candidates in TaxonDao and NameService

cleanup

ref #7478 simplify taxon hql search code

cleanup

ref #7478 some cleanup and renaming for taxon hql search

ref #7478 fix pro parte synonym search in taxon hql search (still untested)

cleanup

cleanup

ref #6321 Make OrderHint serializable

ref #3560 fix includeUnpublished for taxon relationships and correct includePublished->includeUnpublished

use long instead of int (cont.)

use long instead of int (cont.)

use long instead of int (cont.)

use long instead of int in some of the count methods, use base methods for pageSize/number and order for criteria and queries, cleanup

cleanup

ref #3560 add includeUnpublished for taxon relationships

cleanup and remove rows(xxx) method

fix #7467 taxon name parts lookup method with support for wildcard searches, TaxonNameParts and filter

fixing problems with startH2Server documentation

fix in getUuidAndTitleCache

cleanup

fix #7469 fix column type changer for Postgres

fix #7468 fix update script for mediaCreated in PostGreSQL

ref #3560 implement publish in taxon service by name search

ref #3560 tests for unpublished listRankSpecificRootNodes

ref #3560 implement unpublished for listSiblings in service and remote (no tests yet)

ref #3560 implement unpublished for rankSpecificRootNode in service and remote (no tests yet)

ref #3560 implement unpublished for load and find in service layer

ref #3560 use global "unpublished" constant

cleanup

cleanup

ref #3560 implement publish filter for ClassificationDao.listChildrenOf and .countChildrenOf

cleanup

ref #3560 implement publish filter for TaxonNodeDao.listChildrenOf and .countChildrenOf

minor

ref 3984: add persistence method to get uuidAndTitleCaches for a list of uuids

minor

fix #7433: get specimen by genetic accession number

ref #6752 stricter handling of Reference.setDatePublished (only for calling methods)

ref #7334 error handling in update script for pp synonyms

add annoations to FullCoverageDataGenerator Registration

ref #6588 include ExternalLink in FullCoverageDataGenerator and some new factory method

Add SchemaUpdater_50_51 and remove mediaCreatedOld (ref #7414)

ref #6699 update script for delete term version

ref #2335 add DTYPE update to DescriptiveDataSet renaming

workaround for very strange max(id) behavior in remote-webapp H2 test database