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# Date Author Comment
aefcbf9a 03/04/2015 01:14 PM Cherian Mathew

added class to override Hibernate EntityType class to fix problem with merge replace

933e5ac3 02/23/2015 10:07 AM Cherian Mathew

ICdmCacher, ICdmUuidCacher, CdmCacher, CdmTermCacher : refactored and added load method
Language, NameRelationshipType, Rank : now uses cacher only if termap is null or empty and only when class matches the specific term type
MockCdmCacher: not required anymore...

de5c2087 02/05/2015 11:11 AM Cherian Mathew

ITaxonNodeService, TaxonNodeServiceImpl : added methods using uuids
CdmDataChangeEvent : added new instance method for cdm entity session
CdmPostDataChangeObservableListener : added cdm entity session commit

80ab91c0 01/24/2015 07:19 AM Andreas Müller

for testing

9d8532ab 01/24/2015 06:32 AM Andreas Müller

add taxonNode to session in countByIdentifier

58ba0a9d 01/23/2015 11:03 PM Andreas Müller

improve byIdentifer service

49f7c6b1 01/22/2015 04:47 PM Andreas Müller

missing persistence changes for findByIdentifier

e580c4ca 01/22/2015 11:40 AM Andreas Müller

latest changes for findByIdentifier service

0b9c5cf2 01/21/2015 05:31 PM Andreas Müller

improve and rename findByIdentifier service

e4afb5d7 01/21/2015 04:50 PM Andreas Müller

fix MatchMode.prepend bug

bff1beb0 01/08/2015 10:40 PM Andreas Müller

switch off validation

36fbea3e 01/08/2015 04:43 PM Andreas Müller

rename abstract class

1dff1ca8 01/08/2015 04:40 PM Andreas Müller

rename abstract class

e02ff7c5 01/08/2015 04:36 PM Andreas Müller

merge cdmlib-persistence from validation branch to trunk

97ac524a 01/08/2015 11:46 AM Andreas Müller

first tests for listByIdentifier

6a47f57b 01/07/2015 07:36 PM Andreas Müller

first untested version for findByIdentifier #4594

1bdbfb0f 12/15/2014 12:46 PM Andreas Müller


340b3b05 12/15/2014 12:29 PM Andreas Müller

add username, groupname and GrantedAuthority deduplication #4102

46dba369 12/15/2014 11:22 AM Andreas Kohlbecker

more logging output

b9db5d67 12/11/2014 09:35 PM Patrick Plitzner
  • use labelCache instead of description for amplification labeling
73518da2 12/11/2014 04:02 PM Andreas Müller

implement Amplification.labelCache generation

af44092f 12/10/2014 10:40 PM Andreas Müller

updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552

efacf7a5 12/10/2014 03:47 PM Andreas Müller

update scripts for splitting Amplification and adding labelCache and reversecomplement

af283637 12/09/2014 05:03 PM Patrick Plitzner

merge-update from trunk

395ccc97 12/09/2014 04:44 PM Andreas Müller

separate Amplification and #4541

8c84bc10 12/08/2014 01:27 PM Andreas Kohlbecker

bug fix

9de237d7 12/08/2014 01:27 PM Andreas Kohlbecker

CdmUpdater can run on multiple databases supplied as comma separated list

404c0036 12/04/2014 04:00 PM Patrick Plitzner
  • added service method to get descriptions which have a specimen set as describedSpecimen
    • added test which fails because the XML is loaded incorrectly
96274f18 12/04/2014 09:44 AM Patrick Plitzner
  • changed service method to retrieve the directly related objects
    • adapted tests
9f976540 12/03/2014 11:55 PM Andreas Müller

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

6571e4e5 12/03/2014 10:13 PM Andreas Müller

implement #4529
not yet ready

e850e1c8 12/03/2014 10:12 PM Andreas Müller

minor changes

7d84de65 12/03/2014 10:08 PM Andreas Müller

add nextUpdater to 331_34 updater

01a5514b 12/03/2014 01:29 PM Andreas Müller

some fixes after trunk integration to 341branch

ec352541 12/03/2014 01:22 PM Patrick Plitzner

merge-update from trunk

ccf1f2f1 12/03/2014 10:03 AM Andreas Müller

merge PresenceTerm and AbsenceTerm #4521

b82a6bfc 12/02/2014 09:55 AM Patrick Plitzner
  • added DISTINCT to HQL query for associated taxa
    • created and used XML data source in occurrence service test
06d8cd12 12/01/2014 10:24 AM Patrick Plitzner
  • added occurrence service methods to retrieve all taxa that are associated with a specimen:
    • via IndividualsAssociation
    • via TypeDesignation
    • added test
fdb9cd4c 11/26/2014 03:31 PM Patrick Plitzner
  • added TODO comment
7e9949c5 11/26/2014 12:06 PM Patrick Plitzner
  • removed unused code
a6e9cd03 11/26/2014 12:06 PM Patrick Plitzner
  • implemented service method (and test for it) to get all taxa associated with a single specimen
aebfd8da 11/26/2014 09:53 AM Patrick Plitzner
  • added listAssociatedTaxa() method to occurrence service (non functional)
fa927d2c 11/21/2014 03:36 PM Andreas Kohlbecker


502ea305 11/21/2014 02:21 PM Andreas Müller

Add institution to DerivationEvent and Amplification

0e660e76 11/21/2014 01:55 PM Andreas Müller

add DnaMarker to Primer #4470

bbe6519f 11/21/2014 10:38 AM Andreas Müller

fix bug, add OrederedTerm to hibernate cfg

0f8d094a 11/10/2014 09:49 AM Katja Luther

changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor

5b62196b 10/28/2014 02:09 PM Katja Luther

fix #4450

8e681fe5 10/23/2014 01:44 PM Andreas Müller

remove NOT NULL on OriginalSourceType_AUD.sourceType on existing data #4445

2ca78fa6 10/22/2014 06:54 PM Andreas Müller

last update to schema updater 34.

3e9470c3 10/22/2014 04:51 PM Andreas Müller

fix uuid as UniqueKey problem

9f86c47d 10/22/2014 01:28 AM Andreas Müller

update fullCoverageDataGenerator

a50d65cd 10/21/2014 10:17 PM Andreas Müller

H2 update script fixes in trunk

cc1af289 10/21/2014 12:42 PM Patrick Plitzner

merge-update from trunk

676c29f4 10/21/2014 01:32 AM Andreas Müller

preliminary remove data generator

8e7f173a 10/21/2014 01:23 AM Andreas Müller

preliminary remove data generator

3615c348 10/20/2014 09:14 PM Andreas Müller

allow saving FullDataGenerator data through API (preliminary)

e1030562 10/20/2014 08:21 PM Andreas Müller

add validation framework classes #4439

b03413be 10/20/2014 08:14 PM Andreas Müller

add purificationMethod to update script

323da513 10/20/2014 08:02 PM Andreas Müller

further changes to DnaQuality #4434 and update script for ValidationFramework alpha version

a37014ed 10/20/2014 06:04 PM Andreas Müller

fix methods for new TableCreator constructor

3b38a94c 10/20/2014 06:04 PM Andreas Müller


b998a5a0 10/20/2014 03:35 PM Andreas Müller

make primer.sequence a SequenceString #4139

f6d5e560 10/18/2014 04:27 AM Andreas Müller

add i18n description for Classification. #4428

f539d24c 10/18/2014 03:51 AM Andreas Müller

Geo and time scope for Classifications #3699

0a345e59 10/18/2014 03:14 AM Andreas Müller

first implementation for DnaQuality #4434

9af6d56b 10/18/2014 12:30 AM Andreas Müller

Make Contact URL an url #3920

45732b87 10/17/2014 11:04 PM Andreas Müller

remove View class #4316 and update script for authorTeam rename #4432

ec1059aa 10/17/2014 09:31 PM Andreas Müller

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

f89911d1 10/17/2014 08:53 PM Andreas Müller

rename Reference.authorTeam -> authorship #4432

7e045089 10/17/2014 08:06 PM Andreas Müller

remove series from Reference #4293

54e8de3a 10/17/2014 06:49 PM Andreas Müller

fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers

6e279e47 10/17/2014 12:40 PM Andreas Müller

latest update script update

c200d18b 10/09/2014 01:44 PM Patrick Plitzner

merge-update from trunk

a22369e9 10/08/2014 12:59 PM Katja Luther
c52b7e11 10/02/2014 01:00 PM Katja Luther

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales

69141ef6 09/10/2014 02:56 PM Patrick Plitzner

merge-update from trunk

18a1cf27 09/10/2014 12:38 PM Andreas Müller


42db36e1 09/02/2014 04:22 PM Andreas Müller

add identifiers to hibernate.cfg

dfbf4979 08/25/2014 01:53 PM Patrick Plitzner

merge-update from trunk

c7ff3f1a 08/21/2014 08:08 PM Andreas Müller


01871756 08/21/2014 08:03 PM Andreas Müller


15888e8e 08/21/2014 07:54 PM Andreas Müller

remove potential NPE in CdmDataSourceBase

85da6838 08/21/2014 12:45 PM Katja Luther

isDeletable ignores relations of identifiableEntity

cc6830e9 08/19/2014 03:32 PM Patrick Plitzner

merge-update from trunk

d0e1f771 08/18/2014 09:58 AM Katja Luther
01538dbf 08/11/2014 02:22 PM Patrick Plitzner

merge-update from trunk

e195f728 08/07/2014 01:57 PM Cherian Mathew

added check for non-null operation in constructors

8ed724c1 08/07/2014 11:08 AM Cherian Mathew

making sure operation is always initialised

d0e1e5f3 08/05/2014 11:17 AM Patrick Plitzner

merge-update from trunk

cb16ca65 08/04/2014 12:40 PM Andreas Müller

replace LockMode by LockOptions in service layer and persistence

f31032cb 08/04/2014 12:13 PM Andreas Müller

replace deprecated .lock method in CdmEntityDaoBase

a939f80e 07/01/2014 03:23 PM Patrick Plitzner

merge-update from trunk

afdc25a6 07/01/2014 03:14 PM Andreas Müller


ac005dca 06/26/2014 03:49 PM Cherian Mathew

added findByUuidWithoutFlush method

6cbe0fbb 06/25/2014 04:42 PM Andreas Kohlbecker

fixing #4273 (java.lang.ClassCastException in TaxonDaoHibernateImpl.countTaxaByCommonName() breaks taxon search) and most probably also other CommonName search related tickets

10591368 06/25/2014 04:09 PM Andreas Müller

use unique name for GrantedAuthority and PermissionGroup also #4102

ba2ad201 06/25/2014 03:35 PM Andreas Müller

Unique username and some first update routine (still needs testing) #4102

b04808bc 06/25/2014 11:51 AM Andreas Müller

remove some comments and non-Javadocs

226576dd 06/25/2014 11:49 AM Andreas Müller

first development for the export filter