ref #8062 fix NPE in TaxonGraphTest

ref #8062 first implementation to delete default preferences (only for cdmlib predicates)

ref #8064 ref #7648 autocreation of missing default secRef value in cdm preference model.taxonGraph.secRefUuid/

fix #8064 fixing NPE in AbstractHibernateTaxonGraphProcessor.assureSingleTaxon() - taxa may be missing a sec ref

minor

remove generic references from result for inReference selection

cleanup

ref #7972 FirstdataInserter adding ROLE_REMOTING to the editor groups

ref #7903: TaxonNodeDtoNaturalComparator needs to implement Serializable

fixing wrong boolean operator combination for Restrictions with operator AND_NOT

code cleaning

ref #7939: add oderInderComnparator and use it in taxonnodeDtoRankAndNameComparator

Dto classes for distribution editor

ref #7755: provide all data for specimen pages

ref #7932 first implementation of PreferenceResolver and some adaption to PreferenceService API.

• Correct handling of subtree subjects still open.
• Also creation of user defined subjects still open.

cleanup

add Identifier to CdmPermissionClass

ref #7887 Add "parent" DTOs to TermDto

ref #7887 Refactor TermDto usage

ref #7887 Remove getParent()

ref #7887 Implement term service methods based on DTOs

ref #7829, ref #7800 improve nom. ref. matcher (also changes the result type => needs adaptation in client Apps)

revert: Add series parsing with letters (test) - all unwanted commits

Add series parsing with letters (test)

ref #7884 ref #7890 fixing NPE in name controllers

ref #7884 ref #7890 fixing LIE in name controllers regarding name relations

ref #7831 using uuids in findTaxonNameParts() methods as name exclude filter

ref #7791 adding rank order index to TaxonGraphNodeDTO

fix #7834 findInTaxonGraph implemented for Registrations with RegistrationDTOController endpoint

ref #7831 adding name exlude filter to TaxonNamePartsFilter

ref #7648 fixing bugs related to single taxa per graph and updating rels from lower ranks, with testcase

ref #7799 compute author caches in deduplicationHelper

ref #7648 adding links to the ticket as preliminary rudimentary documentation

ref #7709 adding missing @CdmHibernateListener config annotation to allow activating the TaxonGraphHibernateListener bean

cleanup

ref #7648 free configurable TaxonGraphHibernateListener ready

ref #7648 moving TaxonGraphHibernateListener and related classes into cdmlib-service

ref #7648 TaxonGraphHibernateListener as Spring bean configured via the CdmHibernateListenerConfiguration

ref #7648 automatic management of lower ranked names in the taxon graph

Merge branch 'feature/#7648' into develop

• TaxonGraphDao
• TaxonGraphController
• TaxonGraphService
• TaxonGraphDTO
• TaxonGraphHibernateListener and processor
• tests

ref #7791 TaxonGraphDao supressing Names associated with Registrations where the status is not PUBLISHED

ref #7648 moving taxongraph methods from taxonDao to taxonGraphDao

ref #7791 TaxonGraphNodeDTO with rank labels

ref #7648 more pulling up into AbstractHibernateTaxonGraphProcessor

ref #7648 common base class AbstractHibernateTaxonGraphProcessor to deduplicate TaxonGraph methods

ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments

ref #7648 allowing to set the TaxonGraphHibernateListener inactive - only for test environments

ref #7648 fixing inconsistency in test data and improving logging

ref #7791 using name.titleCache as title for TaxonGraphNodeDTO

adapt CdmPermissionClass

ref #7648 correct handling existing taxa without secReference

ref #7648 introducing CdmPreferenceLookup for cached access to the CdmProperty with predicate 'TaxonGraphSecRefUuid' and others

• using this Preference in TaxonGraphDaoHibernateImpl and TaxonGraphBeforeTransactionCompleteProcess
• adapting tests accordingly...

ref #7648 cleaning up and attempting to fix TaxonGraphService test setup

ref #7648 all TaxonGraph updating done in a BeforeTransactionCompletionProcess implementation - TaxonGraphHibernateListener is working now

ref #7648 TaxonGraphService as dao and TaxonGraphObserver as TaxonGraphHibernateListener

ref #7648 TaxonGraphService complete with full set of tests

ref #7345: fix dao method to get entities with special marker and pattern in titleCache

ref #7345: add dao and service methods to get UuidAndTitleCache marked with a special markerType

ref #7648 initial implementation of TaxonGraphService with tests and TaxonGraphObserver

minor issue with return type of listToTaxonRelationships() fixed

ref #7783 TaxonNamePart with uuid & assuring registrations have an identifier when saved

ref #7745 childNodesOf implemented

cleanup

ref #7745 fix bug in queries with subtree, some first test and cleanup

ref #7745 fix syntax for node.treeindex in query

ref #7745 subtree filter to taxon search (add missing parameter for queries)

ref #7745 add subtree filter to taxon search (not yet tested for subtree != null)

fix #7756 allowig direction to be null again

ref #7745 implement subtree filter for ClassificationController.rankSpecificRootNotes and .childNodes

fix bugs in abcd import

cleanup

ref #7702 avoiding NPE in TargetEntityStates when pervious state is null

ref #7664 adapt return type for many methods with defined typification

ref #6682 try to fix failing query in TaxonDao

ref #6682 try to fix failing query in TaxonDao

ref #6682 add types and deduplicateMisapplications parameter to web service

revert commit ff21181c

ref #6682 further fixes for taxon relationship service

minor

Merge branch 'develop' into feature/specimenPortal

ref #7590 fixing join types for restriction operations

mend

ref #7599: minor

ref #7590 documentation

ref #7590 replacing not flag in restrictions by AND_NOT and OR_NOT operators

ref #7590 implementing AND and OR operator for restrictions and harmonizing code

first implementation for specimen page with DTOs

adding new SpecimenOrObservationType and smaller changes

ref #7573 adding AGTENTBASE to CdmPermissionClass and creating generic RoleProber

fix #7527 making page by parameter with criteria and restrictions available in the service layer

Merge branch 'develop' into aggregation

Conflicts:¶

cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java¶

ref #7531 CdmPermissionEvaluator.hasPermission() wraps cdm entities in TargetEntityStates

ref #7531 RegistrationVoter evaluates previous state on Registration.status changes

ref #7531 intoducing TargetEntityStates to replace plain cdm enities in the permission voting process

renaming variable

TeamAutoInitializer only loads members for Teams

cleanup

ref #7530 3 families and dianthus import (WFO Access Import)

cleanup

ref #7525 ref #7523 allowing to use Restriction as exclude filter

ref #7525 restoring all previously removed Criteria methods