removing all (almost all) spy6 references and dependencies
Preliminary add tableGeneratorGlobalOverride to all session factories again #4716 ()
see also r27338 and r27330
removing tableGeneratorOverride from non testing application contexts
Adapt log4j.properties to hibernate deprecated logging problem
Update dependencies to the latest versions (except for lucene) #4716
Fix upgrade issues after rebase #4716
migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
Upgrade to hibernate 5 with persistence tests running #4716
Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate validator #4716 and #4702
first implementation of TaxonNodeAgentRelation #3583
doumentation
merge validation2 and model 3.5 into trunk
separate Amplification and AmplificationResult.java #4541
implement SingleReadAlignment.java #4529 not yet ready
merge-update from trunk
merge PresenceTerm and AbsenceTerm #4521
fix bug, add OrederedTerm to hibernate cfg
add validation framework classes #4439
first implementation for DnaQuality #4434
remove View class #4316 and update script for authorTeam rename #4432
adapted tcs rdf and xml import, using apache jena for rdf import tcs import for caryophylales minor
add identifiers to hibernate.cfg
fixing #4151 (AdvancedBeanInitializer causes problems when initializing taxonnode hierarchies)
adding permission class for Teams and Persons wich according validator
CdmPermissionClasses for names and references, tests implemented, bug in CdmPermissionClass.from() fixed - #4055 (action enablement adapts to the users granted authorities)
update schema location
switch to Advanced initializing
switching back to HibernateBeanInitializer
switch to advanced bean initializing
use default init as advanced stil creates error
switch to AdvancedBeanInitializer again
revert to DefaultTermInitializer
switch to AdvancedBeanInitializer (also in persistence xml)
switch to AdvancedBeanInitializer
fixing #3786 (Taxon editor view is not enabled even if a user has sufficient permissions)
improving the TitleCacheAutoInitializer and turning it into a TitleAndNameCacheAutoInitializer
moving all beaninitializer classes to new package 'eu.etaxonomy.cdm.persistence.dao.initializer'
change version ->3.3.0, move CdmMetaData, change schema version -> 20130924, fix TaxonServiceSearch test, update update-script
moving preferences into new package and some minor changes
final implementation of MaterialOrMethodEvent, Cloning, PreservationMethod, ... #3360
Change WaterbodyOrCountry name to Country #3700
Update script for termtype and some other, remove InstitutionType and COntinent, update idInVocabulary, ...
change some names in molecular and update the update script
Add MediaSpecimen (still missing schema updater and tests) #3614
first implementation of new molecular package #3360
Rename RightsTerm -> RightsType #1306
implement CDMPreferences #3555
move DescriptionElementSource to description package #2345
remove ReferencedMediaBase and Figure, let PhylogeneticTree inherit from Media, remove citation and microcitation columns from DB
rename FieldObservation -> FieldUnit #3351
adding recordBasis to SpecimenOrObservationBase and removing some DerivedUnit classes (all #3378) and adding kindOfUnit to SpecimenOrObservationBase (except for according termType and vocabulary) #3568.
Remove GenBankAccession class, Spatium for EN_DASH and some minor stuff for v3.3
exchange modifier classes by DefinedTerm, add termtype to csv files, make term loader required constructor private
remove TdwgArea and add termType and idInVocabulary (#2998, #3478, #3479, #3539) in persistence
marker.markerType always initialized and serialized
removing events from hibernate.cfg.xml
fix all Specimen test including new implementation for hibernate listeners
Hibernate 4 migration. All test running except for SDDImport (Out of memory)
fixing #3216 (specimens: type specimens should be displayed with type status)
introducting MediaAutoInitializer
autoinitialization of termbase.references and point.exactlocation (indirectly)
using run-as authentication in firstDataInserter
test for TaxonService.findByFullText() successful
reverting erroneously commits r16027 to r16031
fixing testing context in persitence and fixing test
AccessDecisionVoter based acl implementation working - all test succeed, but assertions in test missing
reverting last commit - will be committed again later
merging in git branch 'methodSecurityExpressions' and resolving conflict in SecurityTest.java
more tests and features for #476: Implement free-text search methods for TaxonBase and TextData
security stuff
merging branches/cdmlib/Kew_Palm_Use_Data_Extension into trunk & cleaning up a bit
AT: committing merge changes
AT: committing latest changes to the remote project
minor change in p6spy.properties - using default log file
Merging r13268 through r14040 from trunk/cdmlib into branches/cdmlib-unitils3
h2 as test alternative database & potentially fixing #2100 (Fix tests not running in suite)
whitespace
adapting xml datasources to unitils 3.3
related to #2664 (Specimen maps are not shown in cyprus dev portal) - now the occurrence map is colored
change name of ReferencedMedia to ReferencedMediaBase (#2381)
fixing #2243 "c3p0 connection pool is loosing connection over night"
merge 3.0.2 to trunk
fixing #2012
better logging and reporting
first implementation of autoinitialization - will be improved
merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk
preparing for hibernate-c3p0 & commenting out all System.err.println
now updated is set and all tests are ok.
revert the changes for the saveOrUpdate Listener because of failures in tests
changes for ticket #1286
revert the model changes...
rightsterm -> rightstype ticket #1306
refactoring the references for imports...
merged from branches/cdmlib/2.2 7238-7345 into trunk
Deleted Keyword class