EDIT

add update script and JAXB annotation for sequence positions #4743

update script for removing unique key on supportedCategoricalEnums and recommendedModifierEnums #4843

add update script for hasMoreMembers #4791

merge trunk into 36 branch

Create updater for cdm36 and update schema/term version

allow different type merging not only for reallocation of links

Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between

correct handling of terms with multiple representations

implementing better namedAreasInUse service for #3994 (Select widget to choose the filter areas for the advanced search)

minor

first implementation of WrappedCdmDataSource #3910

minor cleanup

bugfix for 34_341 Updater

merge validation commits r23146, r23162, r23163 into trunk

fix bug in update script

add listener for taxon name in determination event and run update script again

add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311

update named area idInVocabularies if necessary #4140

make identifier annotatable #4673

minor

update script for orphaned taxon node removal #2341

merge validation2 and model 3.5 into trunk

fix search for common names in editor and minor

for infrageneric unranked rank adding unranked
fixing bug with deletion of names and homotypicalGroups

• fixed java doc

for testing

add taxonNode to session in countByIdentifier

improve byIdentifer service

missing persistence changes for findByIdentifier

latest changes for findByIdentifier service

improve and rename findByIdentifier service

fix MatchMode.prepend bug

switch off validation

rename abstract class

rename abstract class

merge cdmlib-persistence from validation branch to trunk

first tests for listByIdentifier

first untested version for findByIdentifier #4594

minor

add username, groupname and GrantedAuthority deduplication #4102

more logging output

• use labelCache instead of description for amplification labeling

implement Amplification.labelCache generation

updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552

update scripts for splitting Amplification and adding labelCache and reversecomplement

merge-update from trunk

separate Amplification and AmplificationResult.java #4541

bug fix

CdmUpdater can run on multiple databases supplied as comma separated list

• added service method to get descriptions which have a specimen set as describedSpecimen
  • added test which fails because the XML is loaded incorrectly

• changed service method to retrieve the directly related objects
  • adapted tests

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

implement SingleReadAlignment.java #4529
not yet ready

minor changes

add nextUpdater to 331_34 updater

some fixes after trunk integration to 341branch

merge-update from trunk

merge PresenceTerm and AbsenceTerm #4521

• added DISTINCT to HQL query for associated taxa
  • created and used XML data source in occurrence service test

• added occurrence service methods to retrieve all taxa that are associated with a specimen:
  • via IndividualsAssociation
  • via TypeDesignation
  • added test

• added TODO comment

• removed unused code

• implemented service method (and test for it) to get all taxa associated with a single specimen

• added listAssociatedTaxa() method to occurrence service (non functional)

whitespace

Add institution to DerivationEvent and Amplification

add DnaMarker to Primer #4470

changes in service layer for fixes in bulg editor and search for misapplied names and common names in editor

fix #4450

remove NOT NULL on OriginalSourceType_AUD.sourceType on existing data #4445

last update to schema updater 34.

fix uuid as UniqueKey problem

update fullCoverageDataGenerator

H2 update script fixes in trunk

merge-update from trunk

preliminary remove data generator

preliminary remove data generator

allow saving FullDataGenerator data through API (preliminary)

add purificationMethod to update script

further changes to DnaQuality #4434 and update script for ValidationFramework alpha version

fix methods for new TableCreator constructor

minor

make primer.sequence a SequenceString #4139

add i18n description for Classification. #4428

Geo and time scope for Classifications #3699

first implementation for DnaQuality #4434

Make Contact URL an url #3920

remove View class #4316 and update script for authorTeam rename #4432

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

rename Reference.authorTeam -> authorship #4432

remove series from Reference #4293

fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers

latest update script update

merge-update from trunk

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

merge-update from trunk

typos