EDIT

#5958 fix failing tests

#5958 Implement name part search as web service

#5957 Fix empty treeindexes

#5957 mplement groupByHigherTaxon webservice

fix failing Polytomouskey test

#5681: move removeNullValueFromCollections to PostMergeEntityListener

new method removeNullValues in CdmPreDataChangeListener

Clean up

#5945 Deduplicate results from termloading by class

refactoring listByIds to loadByIds

fix getUuidAndTitleCache for pattern with ?

fixing bugs related to the rank intervall in the TransmissionEngineDistribution

solving multiple problems in TransmissionEngine

• avoiding LIE by fetching the parentAreas for each batch
• skipping taxa not in specified rank interval

attempt to reduce the overhead imposed by database access

fix getUuidAndTitleCache for pattern with * or ?

fix UuidAndtitleCache methods for pattern with asterisk

fix getUUIDAndTitleCache for references

#5852 dao, service and controler for taxonNode sibling retrieval

Revert "fix getTaxonUUIDAndTitleCacheForClassification"

This reverts commit 65149714aee38dad433405eb78195ac1ef5c4da3.

fix getTaxonUUIDAndTitleCacheForClassification

refactoring taxonNode controllers - return dtos from the service layer, support for #5887

Try to fix pattern issue in taxon uuidAndTitleCache search

Simplify taxonDao

Fix bug in TaxonDaoHibernateImpl

minor

add limit and pattern to the uuid and titlecache methods

add limit and pattern to getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification

#5858 adding missing join fetch in AutoPropertyInitializer

Further develop the CDM preferences #3958

Merge branch 'master' into develop

Add generic find(clazz, uuid) method #5853

Fill empty titleCache only during save and improve classification titleCache generation #5849

Revert class not found exception in referencing objects to pure logging.

Cleanup getReferencingObjects

Cleanup

Further cleanup and rename new default cache strategy to default cache strategy #5833

Implement single cache strategy for references #5833

• Implemented new class NewDefaultReferenceCacheStrategy and helper class TitleWithoutYearAndAuthorHelper
• Moved all functionality of old ReferenceCacheStrategies to new class(es)
• Moved all old strategies to package .old...

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

new method to get UuidAndTitleCache objects with nomenclatural
titleCache for teamOrPersonBase

Fix possible class cast exception for collections of features #5780

Fix empty protected titlecaches #5763

Adapt reusability of Credits / Rights

Remove method agentsUsedAsUsers related to #5743

Remove bidirectionality for supplemental data #5743

Clean up AnnotationDao and AnnotationService

#5482 web services now support different orderBy modes

minor

minor

Add missing type information to UuidAndTitleCache object for search
results #5700

• fixes NPE

fix #5672

smaller changes for fauna europaea import and csvNameExport

Also return all specimens belonging to sub classes when specifying
SpecimenOrObservationBase as type

Fix deduplication problem with list order #5652

minor

TaxonNodeByNameComparator is not a component anymore and add configurable delete method for media

like before

Move TableGenerator(GlobalOverride) from test to persistence #4716

Revert "#5563 fixed by avoiding access to null FeatureNodes"

This reverts commit cabfc584dd026a8c139b837af01af786bb619bed.

#5563 fixed by avoiding access to null FeatureNodes

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

Merge branch 'hotfix/3.12.3' into develop

Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java

fix #5538

check for empty excludeUuid list

Change logging error to info

#4962 using LEFT FETCH JOIN for ranks and sec fixed problems and improves performance

Update to lucene 5.4 and some minor dependency updates

fixing problems regarding lucene search after merge - one test still failing

resolving conflicts after merge of ticket_4716 into develop

Cleanup description generics (related to #5357)

revert the commit of the renamed deletelistener

add null check for delete and minor

minor for #5391

organizing imports

#4716 reduicing clutter in the lucene index and solving performance problems which probably fixes #4277 and #3663

Generalize term service method listByTermType()

changes for #4960 and #4959

#4716 IndexDocValue relates issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful

add LIKE to MatchMode #5391

Fix issues after rebase #4716

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Adapt cdmlib-persistence to new testing architecture #5370

Upgrade to hibernate 5 with persistence tests running #4716

Further adapt to new jackson and new lucene version #4716

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

#4962 commenting performance measure print-out via System.err

#4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement

revert chamges in MatchMode

#4313 relationship type as additinal filter option for TaxonNodeAgentRelation services

Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen

Check for names and synonymy when checking specimen determinations

Add java doc

Clean up BeanInitNode embeddable issues #5383

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options

fixing #4878

Fix associated specimen retrieval for name determination

• added test

Extend service methods to retrieve specimens that are determiined as a
taxon name

When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations