EDIT

fixed jboss maven repository location

Remove eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.findByNameForEditor()

adding permission handling and writing a test for usermanagement

getTermByRepresentationAbbrev

minor

wrong import for EnumType

countByTitle() method for IIdentifiableService

added EnumType to the noDoTypes

typos

fixing #2329 (Synonym types not shown in specimen tab)

removing parameters for WorkingSetService method

bugfix for DescriptionDaoImpl.getDescriptionElementForTaxon (missing implementation for features)

new implementation for Xper data fetching from persistence and some further changes to Xper

code cleaning

splitting PolytomousKeyNodeService from PolytomousKeyService & more methods for IdentificationKeyService

refactoring for findByParam, moved down to CdmEntityBase

implement list find method for user and group services (#2283 and #2284). Tests are still missing.

the query of prepareQuery always returns the type, if doNotReturnFullEntities is set

fixing #2274 ClassCastException in search

minor changes

remove import

#1787, the UuidAndTitleCache.type is set

a comment to (fixing #2232)

fixing #2232

Reverting the RightsTerm -> RightsType change (see #1306). This is a model change and needs updates to the schema. We will transfer this into a branch.

#1306

#1787 a faster search for the editor

replace deprecated methods with new ones #2176

harmonizing nameRelationship methods #2159

method name harmonization

Implemented a uuidAndTitleCache method for institutions

Improved uuidAndTitleCache methods of ITaxonService

Added a new match mode. With the existing match modes it was impossible to perform an inexact search (i.e. like) and definging wildcards yourself.

Also fixes #1381

solves a bug that led to strange behavior in the editor's taxon navigator

merge 3.0.2 to trunk

minor

minor

minor

Implement all name relationships search

minor

getting all SpecimenOrObservationBases for a Taxon

excluding INDIVIDUALS_ASSOCIATION from default tree

NaturalLanguageDescriptions visible in the DataPortal

sdd import matches descriptions to existing taxa

Added check for NULLs in genusOrUninomial and specificEpithet

Modified comment

Added sourceReference

re-integrating branches/cdmlib/oai-pmh up to revision 10059

Added Sources to inferredSynonyms

cleaned up

Avoided NPE and ConcurrentModificationException

Avoided ClassCastException

cleaned up

Added countByReferenceTitle()

Added countByReferenceTitle()

Added logging messages

Modified findZoologicalNameByUUID() to gain performance

Adapted establishment of criteria in countTaxaByName() and findTaxaByName()

Added findByReferenceTitle()

Added some needed transient methods to feature tree and nodes

Created a new FeatureNodeService. For some reason this service is not covered by a component-scan and the bean has to be instantiated (quasi) manually.

fixing LazyInitialization

fixing auto initialization for collection types

first implementation of autoinitialization - will be improved

saveOrUpdateAll

minor

implemented a couple of getUuidAndTitleCache methods for agents

misapplication refactory

merging the last changes from SPRINT-Cichoriea1 into trunk

merging /branches/cdmlib/SPRINT-Chichorieae1/ to trunk

Merging cdmlib-persistence to trunk; pesi. Merge rev 8083-8429.

added a new method to IMediaService that will return the complete ImageInfo object and not just the metadata. Removed persistence layer from call stack of IMediaService methods that talk to ImageMetaData.

Added a method to retrieve terms by class.

merging PESI brach into trunk

Objects initialized through property paths are now deproxied

merge cate-development2 branch with trunk

fixing loadRankSpecificRootNodes

code cleaning

fixing bug in loadRankSpecificRootNodes

improving loadRankSpecificRootNodes

Added WorkingSetDao & Service

Corrected bug in AuditEventDao

implement the delete method, to delete the refering taxonbases #1390

fixed bug in listDescriptions

#1390

fixes #1365 and #1366

Allowed replace(T x, T y) to accept null for the second argument and globally replace x with null or remove x from collections

Altered ReferringObjectMetadataFactoryImpl to exclude bidirectional relationships where the replaced entity is the "owner" of the related entity (i.e. the relationship is mapped by @OneToMany & mappedBy != null) since those kind of relationships don't make sense in the context of a global replace method.

Updated ICdmEntityDao replace(T x, T y) and refresh(T t, LockMode lockMode, List propertyPaths) and added methods to IAnnotationDao

ReferringObjectMetadata now queries higher up the hierarchy of classes to obtain a reference to a property

Added public T replace(T x, T y) to ICdmEntityDao, implementation and tests

Added an IIdentificationKeyDao to query across all identification key types

Added an IIdentificationKeyDao to query across all identification key types

Added merge(T t, LockMode lockmode) and refresh(T t, LockMode lockmode) to allow developers to bypass the session & second-level cache (useful in some instances)

Removed unnecessary print statement

Refactored free text search to re-use the same code for all identifiable entities. Switched to StandardAnalyzer to include indexing of numbers. Removed redundant code from taxonDao.delete() method (as included entities deleted using hibernate's cascade method)

removed some System.err.println()...

fix of ticket #1344