EDIT

refactoring taxonNode controllers - return dtos from the service layer, support for #5887

Try to fix pattern issue in taxon uuidAndTitleCache search

Simplify taxonDao

Fix bug in TaxonDaoHibernateImpl

minor

add limit and pattern to the uuid and titlecache methods

add limit and pattern to getTaxonNodeUuidAndTitleCacheOfAcceptedTaxaByClassification

#5858 adding missing join fetch in AutoPropertyInitializer

Further develop the CDM preferences #3958

Add generic find(clazz, uuid) method #5853

Revert class not found exception in referencing objects to pure logging.

Cleanup getReferencingObjects

Cleanup

Further cleanup and rename new default cache strategy to default cache strategy #5833

Implement single cache strategy for references #5833

• Implemented new class NewDefaultReferenceCacheStrategy and helper class TitleWithoutYearAndAuthorHelper
• Moved all functionality of old ReferenceCacheStrategies to new class(es)
• Moved all old strategies to package .old...

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

new method to get UuidAndTitleCache objects with nomenclatural
titleCache for teamOrPersonBase

Fix possible class cast exception for collections of features #5780

Adapt reusability of Credits / Rights

Remove method agentsUsedAsUsers related to #5743

Remove bidirectionality for supplemental data #5743

Clean up AnnotationDao and AnnotationService

minor

minor

Add missing type information to UuidAndTitleCache object for search
results #5700

• fixes NPE

fix #5672

smaller changes for fauna europaea import and csvNameExport

Also return all specimens belonging to sub classes when specifying
SpecimenOrObservationBase as type

Fix deduplication problem with list order #5652

TaxonNodeByNameComparator is not a component anymore and add configurable delete method for media

Revert "#5563 fixed by avoiding access to null FeatureNodes"

This reverts commit cabfc584dd026a8c139b837af01af786bb619bed.

#5563 fixed by avoiding access to null FeatureNodes

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

Merge branch 'hotfix/3.12.3' into develop

Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java

fix #5538

check for empty excludeUuid list

Change logging error to info

#4962 using LEFT FETCH JOIN for ranks and sec fixed problems and improves performance

Update to lucene 5.4 and some minor dependency updates

resolving conflicts after merge of ticket_4716 into develop

Cleanup description generics (related to #5357)

add null check for delete and minor

organizing imports

Generalize term service method listByTermType()

Fix issues after rebase #4716

Upgrade to hibernate 5 with persistence tests running #4716

Further adapt to new jackson and new lucene version #4716

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers

#4962 commenting performance measure print-out via System.err

#4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement

#4313 relationship type as additinal filter option for TaxonNodeAgentRelation services

Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen

Check for names and synonymy when checking specimen determinations

Add java doc

Clean up BeanInitNode embeddable issues #5383

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options

fixing #4878

Fix associated specimen retrieval for name determination

• added test

Extend service methods to retrieve specimens that are determiined as a
taxon name

When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers

added DAO for SingleReads #5200

Return type designations with associated taxa

Fix return type

Revert throwing of exception for invalid property path #5077

Revert "minor"

This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.

minor

Fix AdvancedBeanInitializer for envers collections/maps #5077

Throw exceptions in AdvancedBeanInitializer instead of logging only
#5077

fixing getUUIDAndTitleCache for Classification and excluding taxa

Fully remove old vocabulary.byClass methods #3843

Remove listEmpty method from TermVocabularyDao #3843

Add vocabulary list method by term types #3843

Merge branch 'ticket-5066' into develop

Conflicts:
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/PostMergeEntityListener.java

minor clean ups

Add new merge method for root entitites which returns the newly created MergeResult object

Merge branch 'develop' into ticket-5066

Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Language.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CdmListenerIntegrator.java

Set transient id for root merge object

resolving conficts in project versions after hotfixrelease

#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods

Revert "#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods" since this commit needs to be in a hotfix release.

This reverts commit 2693f7105470815383cdf485355e7fc5ad81ed68.

#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods

Add a new merge method in the service base class which allows the option to return the transient object

Allow retrieving objects via ICommonService and UUID (#5160)

#5229 avoiding LIE by autoinitializing the taggedTitle for TaxonBase

fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage

changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person

#5067 Updates for remoting derivate hierachy views

Update service layer calls to use uuids, Add property paths to find call for performance tuning

#5066 Replace cdmlib persistence hibernate events listener with pre-[insert/update] for updatedby / createdby updates

Stash updated for bkp

#5056 Refactored 'save' call to return saved entity

Add find- and countByTitle() methods to primer and amplification service

#5031 Corrected common service / dao collection methods to use uuid + fieldName

Improve E+M post import methods #3979

Improve distribution transmission engine for E+M import #3979

Rename remaining occurrences of xxxAuthorTeam #4968

Rename remaining occurrences of combinationAuthorTeam and
basionymAuthorTeam in code and other files