EDIT

Remove method agentsUsedAsUsers related to #5743

Remove bidirectionality for supplemental data #5743

Clean up AnnotationDao and AnnotationService

minor

minor

Add missing type information to UuidAndTitleCache object for search
results #5700

• fixes NPE

fix #5672

smaller changes for fauna europaea import and csvNameExport

Also return all specimens belonging to sub classes when specifying
SpecimenOrObservationBase as type

Fix deduplication problem with list order #5652

TaxonNodeByNameComparator is not a component anymore and add configurable delete method for media

Revert "#5563 fixed by avoiding access to null FeatureNodes"

This reverts commit cabfc584dd026a8c139b837af01af786bb619bed.

#5563 fixed by avoiding access to null FeatureNodes

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

Merge branch 'hotfix/3.12.3' into develop

Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java

fix #5538

check for empty excludeUuid list

#4962 using LEFT FETCH JOIN for ranks and sec fixed problems and improves performance

Update to lucene 5.4 and some minor dependency updates

resolving conflicts after merge of ticket_4716 into develop

Cleanup description generics (related to #5357)

add null check for delete and minor

organizing imports

Generalize term service method listByTermType()

Fix issues after rebase #4716

Upgrade to hibernate 5 with persistence tests running #4716

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers

#4962 commenting performance measure print-out via System.err

#4962 avoiding bean initialization in getChildNodesAtRank() as much as possible - performance improvement

#4313 relationship type as additinal filter option for TaxonNodeAgentRelation services

Add new service method listDerminationEvents to occurrence service which
lists all determination events that contain the given specimen

Check for names and synonymy when checking specimen determinations

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations throught the AgentController with filter options

fixing #4878

Fix associated specimen retrieval for name determination

• added test

Extend service methods to retrieve specimens that are determiined as a
taxon name

When retrieving associated specimens retrieve all
IndividualsAssocations, TypeDesignation, Determinations

#4313 implementing full stack of methods to expose TaxonNodeAgentRelations via remote controllers

added DAO for SingleReads #5200

Return type designations with associated taxa

Fix return type

Revert "minor"

This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.

minor

fixing getUUIDAndTitleCache for Classification and excluding taxa

Fully remove old vocabulary.byClass methods #3843

Remove listEmpty method from TermVocabularyDao #3843

Add vocabulary list method by term types #3843

Merge branch 'ticket-5066' into develop

Conflicts:
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/PostMergeEntityListener.java

minor clean ups

Add new merge method for root entitites which returns the newly created MergeResult object

Merge branch 'develop' into ticket-5066

Conflicts:
cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/Language.java
cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/CdmListenerIntegrator.java

Set transient id for root merge object

resolving conficts in project versions after hotfixrelease

#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods

Revert "#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods" since this commit needs to be in a hotfix release.

This reverts commit 2693f7105470815383cdf485355e7fc5ad81ed68.

#5288 - avoiding unncessary entitiy loading, using uuid instead in dao methods

Add a new merge method in the service base class which allows the option to return the transient object

Allow retrieving objects via ICommonService and UUID (#5160)

fixing broken pager mechanism for listRankSpecificRootNodes() and improving test coverage

changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person

Update service layer calls to use uuids, Add property paths to find call for performance tuning

#5066 Replace cdmlib persistence hibernate events listener with pre-[insert/update] for updatedby / createdby updates

Stash updated for bkp

#5056 Refactored 'save' call to return saved entity

Add find- and countByTitle() methods to primer and amplification service

#5031 Corrected common service / dao collection methods to use uuid + fieldName

Improve E+M post import methods #3979

Improve distribution transmission engine for E+M import #3979

Fix ignored test in TaxonDaoHibernateImplTest #2815

fix listRankSpecificRootNodes behavior for ranks in between and some
additional tests

add some tests for rankSpecificRootNodes, related to #2778

avoiding LEFT OUTER JOIN by splitting query in two

pushing delete to end of method to fix problem with merge

disabling sql tracing in logs

merge trunk into 3.6 branch

minor

Move FullCoverageDataGenerator from test to real, to avoid dependency problems.

remove dependeny to test (FullDataCoverage...)

adapt FullCoverageData method

fix test and add factory method #3583

moving UuidAndTitleCache from model to persistence. #4799

added id to uuidAndTitleCache #4799 (bugfix)

added id to uuidAndTitleCache

further performance improvements: - better autoinitialization of collection items, - fixing bug in AdvancedBeanInitializer: adding missing LEFT to JOIN FETCH

fixing #4903 (SQLGrammarException exception in description/namedAreasInUse)

• added significantIdentifer as search parameter to occurrenceService.findByTitle()

delete the embedded class UuidAndTitleCacheOfAcceptedTaxon

Remove left join from listNamedAreasInUse #4820

fix term loading bug for originally empty vocabularies #4248

adding first implementation for getting a csv file with all name informations

removing sql tracing from DescriptionDaoImpl

• added findOccurrences() and countOccurrences() to service layer
  • added configurator for these methods
  • optimized retrieval with HQL query
  • made use of service method in DerivateSearchView

order area terms DTOs by idInVocabulary

allow different type merging not only for reallocation of links

Make deduplication of TeamOrPersonBase possible in cdmlib #4768 and solve test problem in CdmGenericDaoImplTest #2096, finding some bugs in between