ref #9843: adapt other uses of SortableTaxonNodeQueryResult
ref #9843: fix taxonnode dto creation and add parent uuid
ref #6296: cleanup
ref #9803: fix not loaded subtree in DDS
code cleaning - continue
code cleaning
code cleaning, move hql queries to dao
ref #7981: fix taxonnodeDto taxon titlecache
ref #9710: switch to dtos for descriptive data set and descriptions for character matrix
ref #9704: fix NPE for * in search
ref #6359, ref #9627 fix tests for setSecundumForSubtree workaround
ref #9627 workaround for update result including taxonBase in setSecundumForSubtree
cleanup
ref #6359 improve progress monitoring for setSecundumForSubtree
ref #6359 fix NPE when removing sec
ref #6359 finetuning for updatedObjects in setSecundumForSubtree (distinguish taxon and originalsource)
ref #6359 add session.clear()
fix compile error
ref #6359 fix update issue
ref #6359 improve partition handling
ref #6359 improve updated objects behavior
ref #9598 some parameter renaming and improve updated objects behavior
fix #9601 allow misapplied names and proparte Syns to set secundum for subtree
remove unnecessary second load
ref #9593: revert some changes in taxonDao not belonging to this ticket
ref #9575: adapt findTaxaAndNames for doAuthors, add test case
ref #9593: add polytomouskey handling in PostMergeEntityListener to avoid NULL values - avoid NPE
ref #9578 , ref #8889 fix behavior of TaxonNodeDaoHibernateImpl.listChildrenOf() with recursive=true and comparator
fix #9561 make protectedTitleCache search a search with MatchMode.Beginning OR Anywhere
fix #9561 fix search searches on titleCache also if titleCache is protected
ref #9327 update script updated and some further test and propertyPath adaptations
ref #9327 fix tests in persistence and service layer
ref #9327 add sec source to TaxonBase (with few open issues)
add test for uuidAndTitleCache in TaxonNodedao and code cleau
ref #9457 , ref #9461 fix incorrect handling of AND/OR logic in doubtfulPattern handling in TaxonNodeDaoHibernateImpl.getUuidAndTitleCache
ref #9457 fix missing space in HQL (cont.)
fix #9457 fix missing space in HQL
ref #9354 unify TaxonNodeDao.listChildrenOf(...) methods
ref #8889: sort taxonnodes for distribution editor on server side
ref #9204 update to hibernate 5.1.17 in cdmlib
ref #9171: add includeDoubtful flag to uuidAndTitleCache searchh
improve generics for list... and findTaxaByName
fix #9047 fix search does not return orphaned synonyms
ref #7140 , ref #8802 implement supportedDataTypes and availableFor for Feature
ref ref #8815 adding condition which was lost during conflict resolution
ref #8815 reverting return types from UuidAndTitleCache to TaxonNodeDto
Revert "ref #8815: add UuidAndTitleCache methods again in taxonnodeservice"
This reverts commit 47c1bab5d954d21e17653072c211a7ae53e53e97 + 75e3aef5f2a567e2833c03f13194b062a5d58947
Resolved Conflicts: cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/taxon/TaxonNodeDaoHibernateImpl.java...
ref #8907 adding missing constructor to hql query
ref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonComparator - step 2
ref #8907 SortableTaxonNodeQueryResultComparator to replace UuidAndTitleCacheTaxonComparator
fix #8892 fix select statement for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()
ref #8892 implementing test for TaxonNodeDaoHibernateImpl.getUuidAndTitleCache()
ref #8892 loading ranks in hql with LEFT OUTER JOINs
fix #8892: fix problem of name without rank in taxon search
ref #1447 improve findIdenticalNames
ref #1447 reimplement getParentTaxonNodeDtoForRank() to fetch taxa of specific higher ranks
ref #8815 adapt return type for uuidAndTitleCache method in taxonNodeService
ref #8815: add UuidAndTitleCache methods again in taxonnodeservice - continue
ref #8815: add UuidAndTitleCache methods again in taxonnodeservice
cleanup taxonnodeDto - UuidAndTitleCache
ref #8684 fixing bean collection initialization in TaxonDaoHibernateImpl.findTaxaByName
ref #1447 fix findIdenticalName function
ref #1447 change duplicate finding of names from sec to source reference and allow >2 sources
fix #8684 adding initStratery to ITaxonService.findTaxaByName
fix #8683 TaxonDaoHibernateImpl.countTaxaByName rename parameter authorship authorshipCache
fixing scary string compare bug
fix #8676 adding authorship parameter to countTaxaByName
ref #1445: code cleaning - continue
ref #1445: improve search for identical names
ref #1445: fix helper methods for pesi merging
ref #8479 ordering for taxon nodes implemented in TaxonNodeFilter and in loadById
minor
fix #8446 Allow setPublish for subtree to filter for hybrids
fix #7450 allow setPublish for subtree to include misapplied names and pro parte synonyms
ref #7450 implement interfaces and signatures for setPublishForSubtree for misapplications and ppSyns (not yet implemented)
ref #8321 implementing page by restriction method to allow for flexible web service queries, also protecting unpublished taxa and names ref #3560
ref #8162 move term related classes from persistence(.dao.)common to .term
ref #8162 adapt cdmlip to new term package structure
ref #7648 moving taxongraph methods from taxonDao to taxonGraphDao
ref #7791 TaxonGraphNodeDTO with rank labels
ref #7791 using name.titleCache as title for TaxonGraphNodeDTO
ref #7648 TaxonGraphService complete with full set of tests
ref #7648 initial implementation of TaxonGraphService with tests and TaxonGraphObserver
ref #7745 childNodesOf implemented