EDIT

Upgrade to hibernate 5 with persistence tests running #4716

pushing delete to end of method to fix problem with merge

moving UuidAndTitleCache from model to persistence. #4799

added id to uuidAndTitleCache

adding first implementation for getting a csv file with all name informations

for infrageneric unranked rank adding unranked
fixing bug with deletion of names and homotypicalGroups

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

better use of generics in service layer and persistence list methods

missing @Override

merge trunk and bugfix linkbackuri jaxb

solving lazy loading exception

Hibernate 4 migration. All test running except for SDDImport (Out of memory)

Implementations of functions which,

• find taxon names by title/uuid
• find taxons by uuid

getAllRelationships reimplemented to match only relevant relationship classes,
Export generics include Transformer type

change logging levels for find zoologicalName

fixed jboss maven repository location

Remove eu.etaxonomy.cdm.persistence.dao.hibernate.name.TaxonNameDaoHibernateImpl.findByNameForEditor()

fixing #2329 (Synonym types not shown in specimen tab)

#1787, the UuidAndTitleCache.type is set

method name harmonization

Implement all name relationships search

minor

getting all SpecimenOrObservationBases for a Taxon

Avoided ClassCastException

cleaned up

Added logging messages

Modified findZoologicalNameByUUID() to gain performance

merging PESI brach into trunk

implement the delete method, to delete the refering taxonbases #1390

Refactored free text search to re-use the same code for all identifiable entities. Switched to StandardAnalyzer to include indexing of numbers. Removed redundant code from taxonDao.delete() method (as included entities deleted using hibernate's cascade method)

Refactored methods in VersionableDaoBase etc + added Query-By-Example for CdmEntityDaoBase

Merged in changes from cate-development branch and upgraded to spring 3.0.0.RC1

changed flush mode to COMMIT. Solves lots of issues regarding hibernate conversations.
added getUuidAndTitleCache methods at service level

refactored UuidAndTitleCache methods

fixes #940

Added free-text search methods to name & occurrence DAO's

Added methods concerning taxonomic tree to taxon service.

minimum base web services for CDM Portal v2.0

Merged search changes from 2.0

Fixed name/specimen type designation status mapping

Lots of changes, including,
adding List orderHints, List propertyPaths to dao methods
New MarkerDao & impl
Expanded test coverage of beanintialization and cache strategy generator configuration

additional DAO methods for new REST service & bug fixes e.g. in AbstractBeanInitializer

TypeDesignationStatus renamed to SpecimenTypeDesignationStatus

Merged branches/cdmlib/2.0 changes r5130:5370 into the trunk

Committing large number of changes relating to versioning implementation (#108)

Name search functionality for taxonomic editor

added @Qualifier to help autowiring in cdmlib-remote

Implemented generic user & group dao's and ported additional methods for querying TaxonName related information as part of #466

Clean warnings in cdmlib-persistence

Marshall/unmarshall HomotypicalGroup. Improved tables comparison.

Marshal NomenclaturalStatus, TypeDesignations, NomenclaturalReference