EDIT

Improve sort order within a homotypic group (new Comparator) #3338

Add Orthography Rejected to NomenclaturalStatusType #5649

Improve sort order within a homotypic group (new Comparator) #3338

Fix deduplication problem with list order #5652

minor

TaxonNodeByNameComparator is not a component anymore and add configurable delete method for media

Add cultivated, presence questionable to PresenceAbsenceTerms #5443

Update cdmlib version from 3.13.0-SNAPSHOT to 4.0.0-SNAPSHOT

Fix combination author without space parsing #5618

Implement notho rank recognition #3868

workaround for #5590

workaround for delete of polytomous keynodes, because of null values in children list

Add post-separator to better handle tagged text

Refactor format method of cdm formatter

Add new test for author name parsing

Refactor formatter framework

• Simplify interface
• added javadoc
• added static methods

Add reported in error static method

Fix cache strategy for taxon base with appended name #5586 and #5577

Fix bug in TextData factory method.

Minor

Add separator after nom status in taxon titleCache #5576

Fix for DnaSample relation to Identifier, Annotations, etc.

• Add DnaSample to metaDef for Any relation in package-info.java
• added test for SampleDesignation for DnaSample

Fix et al. for collectors #5568

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

Fix javassist error for specimen cache strategy loading #5545

Merge branch 'hotfix/3.12.3' into develop

Conflicts:
cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java
cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java

Implement preliminary Specimen cache strategy using facade cache
strategy

Allow recognizing forma in ranks

Use correct column length annotation #5535

minor

Fix volume range bug in name parser #5518

updating poms for 3.12.3 branch with snapshot versions

Javadoc

Fix NPE in HibernateProxyHelper for null objects

Minor

Adapt log4j.properties to hibernate deprecated logging problem

Fix NPE in DistributionNodeByAreaLabelComparator

Further fix right quotation mark parsing

Add different apostroph to author name parser

Add NomenclaturalStateType 'ined.'

Add commented base code for guessBasionym function to Homotypical group

• and cleanup

Cleanup

Revert "fixing path to spring aspect jar and updating antrun plugin"

This reverts commit 621096729bf02d85279f4520d47fab9ea330edbe.

fixing path to spring aspect jar and updating antrun plugin

updating poms for branch'hotfix/3.12.2' with non-snapshot versions

updating poms for 3.12.2 branch with snapshot versions

fixing project versions

updating poms for 3.12.1 branch with snapshot versions

fixing problems regarding lucene search after merge - one test still failing

resolving conflicts after merge of ticket_4716 into develop

Updating develop poms back to pre merge state

updating develop poms to master versions to avoid merge conflicts

updating poms for branch'release/3.12.0' with non-snapshot versions

updating poms for 3.13.0-SNAPSHOT development

Some minor markup routine updates

add null check for delete and minor

organizing imports

#4716 reduicing clutter in the lucene index and solving performance problems which probably fixes #4277 and #3663

#4761 removing @Indexed from abstract base classes since hibernate now fully supports polymorph class hierarchies

#4761 removing @Field annotation from CdmBase.id which has become obsolete

#4761 fixing broken area filter join query, by circumventing a bug in lucene LUCENE-4824 (numeric fields not supported in join queries)

index creation without errors, most lucene search test working again

• using TextField instead of StringField to enable tokenization for some fields
• @IndexedEmbedded(includeEmbeddedObjectId=true) added where necessary

Add missing formatter to factory method

• Fix possible NPEs

Implement FormatKeys for all currently used occurrences parameters

Implement first take on formatter framework

A formatter provides a string representation of an object based on the
selected FormatKeys

changes for #4960 and #4959

#4716 IndexDocValue related issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful - commit of missing file

#4716 IndexDocValue relates issues solved, indexing now without exceptions, most tests in TaxonServiceSearchTest successful

first steps to make lucene working again

#4716 temporarily making 3 fieldnames lowercase to prevent from trouble with new hibernate naming strategy, needs to be reverted later, see #5369

Update some more hibernate mapping nameings #4716 and #5369

Fix upgrade issues after rebase #4716

Fix issues after rebase #4716

Fix compile issues after rebase #4716

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Upgrade to hibernate 5 with persistence tests running #4716

Further adapt to new jackson and new lucene version #4716

Some cleanups in hibernate user types

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

Upgrade jaxb version and to new glassfish implementation and more spring
cleanup #4716

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

Add spring-context to cdmlib-model

Fix spring-jdbc dependency

Change springframework to spring in cdmlib-model #4702

Fix bug for embeddable classes in AdvancedBeanInitializer #5383

fixing #4878

Add orphanRemoval to SingleReadAlignment set of Sequence #5200

fixing #5303

fixing #5303

Set singleRead to null when removing SingleReadAlignment from sequence
to avoid "object would be re-saved" #5200

Revert "accept the change from a number to null in TimePeriod fields #5319"

This reverts commit a3960fa7c279f2aa9fafbefde098c529e269d382.

fix #5341 and fixing deletion of specimen

Return correct match strategy #5337

#5297 Refactor ProgressMonitorController, Add Remoting Progress monitor

#5297 Add progress monitor service, Add test services

#5297 Add monit import method

#5297 Update no. of work units

#5297 Add new thread class for remoting monitors

#5297 Add owner field to monitor thread and user checks in service...

Minor cleanup

Fix test in dataportal with strict bean initalization #5077

Revert "minor"

This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.

minor

Add some more BeanUtil test to other classes #5307

Fix bean read/write inconsistency in Taxon and TaxonBase #5307