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# Date Author Comment
d6662fd7 03/24/2015 10:17 PM Andreas Müller

handle empty Shift #4734

28ae90a5 03/24/2015 11:35 AM Andreas Müller

merge r23161 into trunk

0b7493c7 03/24/2015 11:31 AM Andreas Müller

merge r23145 into trunk

da0ac859 03/23/2015 04:55 PM Andreas Müller

add Transient to getNullSafe methods and make MarkerType not null Level2 rule

aa2493c9 03/23/2015 03:30 PM Alexander Oppermann

Improved parser for zoological names...

0b8e7a1d 03/20/2015 03:00 PM Andreas Müller

further fixes for collectorTitle #4311

f35bb00a 03/20/2015 02:26 PM Andreas Müller

add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311

ce0733cc 03/20/2015 01:32 PM Andreas Müller

make identifier annotatable #4673

afa979f2 03/19/2015 02:45 PM Andreas Müller

merge validation2 and model 3.5 into trunk

e902c13e 03/19/2015 02:28 PM Andreas Müller

merge validation2 and model 3.5 into trunk

418a2bdc 03/17/2015 11:35 AM Katja Luther

fix search for common names in editor and minor

ab7a4a3e 03/12/2015 05:03 PM Andreas Müller

switching label and text in IdentifierType

effbb5f7 03/12/2015 04:53 PM Andreas Müller

add LSID and Alternative field number to Identifier Type vocabulary #4708, #4674

8095243e 03/10/2015 02:42 PM Andreas Müller

type removed from SpecimenTypeParser

f9af40c0 03/10/2015 11:17 AM Katja Luther
25c90163 03/10/2015 10:53 AM Katja Luther
d052fc56 03/10/2015 10:36 AM Katja Luther
f973242a 03/10/2015 10:06 AM Katja Luther

for infrageneric unranked rank adding unranked
fixing bug with deletion of names and homotypicalGroups

015bcbc3 03/02/2015 01:37 PM Andreas Müller

add NewInstance for Names in Determination Event

c2b0873b 02/27/2015 01:50 PM Andreas Müller

adadpt TimePeriodParser to include lifespan

6ce2dd76 01/29/2015 01:08 PM Katja Luther
38ff1a2b 01/26/2015 01:54 PM Cherian Mathew

PolytomousKey, PolytomousKeyNode : Added merge to cascade annotation
cdmlib-remote-servlet.xml, ConcurrentSessionTest.java : spelling checks
CdmCacher : made cache lement getter methods public
remoting-services.xml, httpInvokerServices : added new services

30936368 01/23/2015 12:40 PM Andreas Kohlbecker

activating the swagger rest service documentation by reverting the revertion of the premature committed experimental branch (swagger) svn: r21387, git: be528c1edf

5ca05f7b 01/23/2015 08:55 AM Patrick Plitzner
  • fixed typo
d3ff3ed4 01/08/2015 05:03 PM Andreas Müller

adding ISelfDescriptive from validation branch

7fdfff82 01/08/2015 03:30 PM Andreas Müller

VocEnum

f2babeb4 01/07/2015 07:45 PM Andreas Müller

factory method for Identifier Type

e66b1f73 01/07/2015 07:44 PM Andreas Müller

labels for some TermTypes

0f441814 12/17/2014 04:20 PM Andreas Müller

minor

6a46c236 12/17/2014 01:46 PM Andreas Müller

add getter and setter for reverse complement

8202c646 12/17/2014 01:13 PM Andreas Müller

minor

b1f3fc31 12/15/2014 06:25 PM Andreas Müller

refactor validation classes

77e098a2 12/15/2014 05:58 PM Andreas Müller

minor

a7621039 12/12/2014 04:25 PM Andreas Müller

javadoc for Amplification and AmplificationResult

c6423b90 12/11/2014 04:29 PM Andreas Müller

test for Amplification labelCache

73518da2 12/11/2014 04:02 PM Andreas Müller

implement Amplification.labelCache generation

747a744e 12/11/2014 03:51 PM Patrick Plitzner
  • added cascade saving for amplification result
    • made constructor protected to avoid JavaAssistEnhancementException
ab739787 12/11/2014 03:30 PM Andreas Müller

doc

2ab8cfdd 12/11/2014 03:29 PM Andreas Müller

handle duplicates in identifier list

acdad405 12/11/2014 12:07 AM Andreas Müller

solve identifier conflict

c2c7b79b 12/10/2014 11:23 PM Andreas Müller

Bidirectional identifier handling

b1e7575d 12/10/2014 11:22 PM Andreas Müller

latest changes to AmplificationResult and DnaQuality

af44092f 12/10/2014 10:40 PM Andreas Müller

updating DnaQuality with typedPurificationMethod to allow both #4434 , #4552

a2c31205 12/09/2014 11:29 PM Andreas Müller

JAXB annotations for amplification results

4c96041a 12/09/2014 10:26 PM Andreas Müller

latest changes for AmplificationResult

bdfdcda2 12/09/2014 05:34 PM Andreas Müller

add labelCache to Amplification #4542

a491689c 12/09/2014 05:33 PM Andreas Müller

some bugfixes to new Amplification modelling #4541

fcab75e4 12/09/2014 05:09 PM Andreas Müller

some adaptations after trunk merge to 3.4.1

af283637 12/09/2014 05:03 PM Patrick Plitzner

merge-update from trunk

2d717c7c 12/09/2014 04:46 PM Andreas Müller

dna Quality purification method

45389cbe 12/09/2014 04:45 PM Andreas Müller

label for PAT voc

395ccc97 12/09/2014 04:44 PM Andreas Müller

separate Amplification and AmplificationResult.java #4541

c1d8fdfa 12/04/2014 03:29 PM Patrick Plitzner
  • re-added hibernate annotation
8cd3690c 12/04/2014 01:55 PM Patrick Plitzner

-removed hibernate search annotation (copy&paste error)

b141d6fb 12/04/2014 09:43 AM Patrick Plitzner
  • fixed bidriectionality for DnaSample<->Amplification
9f976540 12/03/2014 11:55 PM Andreas Müller

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

6571e4e5 12/03/2014 10:13 PM Andreas Müller

implement SingleReadAlignment.java #4529
not yet ready

e850e1c8 12/03/2014 10:12 PM Andreas Müller

minor changes

93613cac 12/03/2014 01:31 PM Patrick Plitzner
  • implemented bidirectionality for derivation events
01a5514b 12/03/2014 01:29 PM Andreas Müller

some fixes after trunk integration to 341branch

ec352541 12/03/2014 01:22 PM Patrick Plitzner

merge-update from trunk

61b380b5 12/03/2014 10:21 AM Andreas Müller

add first version of BigDecimal (still unclear if we want to keep the UserType) #4499

ccf1f2f1 12/03/2014 10:03 AM Andreas Müller

merge PresenceTerm and AbsenceTerm #4521

e5a1b835 12/02/2014 12:43 PM Andreas Müller

remove TODO

b71032bb 12/01/2014 02:47 PM Patrick Plitzner
  • fixed bidirectional mapping
34902b3c 11/27/2014 01:52 PM Andreas Müller

remove FIMXE on protected constructor

724c80be 11/26/2014 03:04 PM Andreas Müller

creationi fo PresenceAbsence Terms

589ecf52 11/26/2014 02:30 PM Andreas Müller

make all defined terms comparable

adac5022 11/24/2014 10:12 AM Patrick Plitzner
  • converted dnaQuality from DefinedTerm to OrderedTerm (#4434)
502ea305 11/21/2014 02:21 PM Andreas Müller

Add institution to DerivationEvent and Amplification

0e660e76 11/21/2014 01:55 PM Andreas Müller

add DnaMarker to Primer #4470

0386b59c 11/21/2014 10:24 AM Andreas Müller
710c18d5 11/21/2014 10:16 AM Andreas Müller

add DNA Quality Type vocabulary

d979d3a0 11/19/2014 05:44 PM Andreas Müller

Add DnaQuality.csv (not fully ready)

03aae089 11/18/2014 09:52 AM Cherian Mathew

ICdmCacher, DefaultTermInitializer : added comments
CdmCacher : added code to disallow null values in cache and moved term initialisation code to specific subclass
CdmDaoCacher : replaced with specialised CdmTermCacher
defaultApplicationContext : removed remoting exception

efe169cc 11/17/2014 06:31 PM Andreas Müller

cleanup javadoc

66bd03c6 11/17/2014 05:50 PM Andreas Müller

update JaxbImportActivator

c8ea97e3 11/12/2014 03:41 PM Patrick Plitzner
  • fixed possible NPE
1446141f 11/12/2014 03:31 PM Patrick Plitzner
  • fixed typo with semantic meaning
0a5d335c 11/12/2014 09:51 AM Patrick Plitzner
  • used ImageFile instead of more generic MediaRepresentationPart when creating the Media (fixes #4402)
    • fixed a typo
5c58acf0 11/11/2014 09:18 AM Patrick Plitzner
  • fixed typo
25ec2e67 11/04/2014 02:58 PM Patrick Plitzner
  • provide contig and read information in portal and webservice
3f9e57cd 10/29/2014 11:39 AM Patrick Plitzner
  • added exception throwing to URI assembly in Sequence class
    • handled exception in editor details view
1fec1343 10/28/2014 03:27 PM Patrick Plitzner
  • made constructor protected to avoid JavaAssistEnhancementException
84cd76e8 10/23/2014 09:20 AM Andreas Müller

revert contact URLs #3920, #4444

ce09e28c 10/22/2014 10:57 PM Andreas Müller

workaround for Contact.urls to solve #4444 preliminary

7021f5c7 10/22/2014 03:48 PM Andreas Müller

reduce size of contact URI due to key length problems

da3a032b 10/21/2014 03:36 PM Patrick Plitzner
  • removed accidentally committed class
b1fe1297 10/21/2014 03:32 PM Patrick Plitzner
  • merge-update from trunk
16552d3b 10/21/2014 03:24 PM Andreas Müller

new convenience method

2c6ae9a6 10/21/2014 02:50 PM Patrick Plitzner

merge-update from trunk

1c6e6c0e 10/21/2014 01:59 PM Andreas Müller

fix init problem for DnaSample

627cb878 10/21/2014 01:21 PM Andreas Müller

bugfix for clone and setDnaSample

42b8a25b 10/21/2014 01:15 PM Andreas Müller

remove debug

8bd8009e 10/21/2014 01:15 PM Andreas Müller

new NewInstance for TermVocabulary

cc1af289 10/21/2014 12:42 PM Patrick Plitzner

merge-update from trunk

6f9c3480 10/21/2014 11:52 AM Andreas Müller

add a bit more bidirectionality to DnaSample/Sequence

4dc84326 10/21/2014 07:51 AM Andreas Müller

return nameRelationship

eb2b587d 10/21/2014 12:25 AM Andreas Müller

cascade SingleRead.materialOrMethod

e1030562 10/20/2014 08:21 PM Andreas Müller

add validation framework classes #4439