Add getter/setter/termloader for (inverse)symbol, fix update script #5734
Remove bidirectionality for supplemental data #5743
Clean up Credit
Add SaveOrUpdate to PKNode.otherNode
Increase length of symbol and inverseSymbol #5734
Change reverseSymbol to inverseSymbol #5734
Shorten metaValues for @AnyMetaDef CdmBase #3701
javadoc
Add TypeDesignations to @AnyMetaData #3701
Clean up DescriptionElementSource.java
Clean up IdentifiableSource java file
Add missing @AnyMetaDef metaValues #3701
Add symbol and reverseSymbol do DefinedTermBase #5734
Adapt table and column names to hibernate 5 naming strategy #5369
... and some other changes to table/attribute names
Fix Jaxb for SpecimenOrObservationBase #5606
Add secundum micro reference to TaxonBase #5717
Add secMicroReference #5717
Add preferred stable URI to SpecimenOrObservation #5606
Add base structure for model update to 4.0
Fix sort order for nom illeg with date #3338
Include nom. illeg. in homotypic group ordering #3338
fix #5669
#5679 catching and ignoring LIEs during the attempt to clean up NULL items in sets
fixing LIE in webservice: taxonNode.sortIndex needs to be @Transient
Update javadoc and illegitimate status for NomenclaturalStatusType.CONS_DESIG #5662
Minor change in order
fix move taxonnode and remove null values from childrenlists in several places
Remove nomenclatural status type ined. as it is a duplicate for nom. provis. (related to Cuba #5443)
Added nom. cons. des. status #5662
#5659 fixing hibernate search indexing annotation
Some additional tests for sorting homotypical groups #3338
Add circular check for homotypicgouptaxon comparator #3338
Include rank comparison in HomotypicGroupTaxonComparator #3338
minor
Fix bug in HomotypicGroupTaxonComparator #3338
Ordering of multiple Homotypic Groups #3338
Some cleanup for HGTaxonComparator #3338
Apply HomotypicGroupTaxonComparator to all existing uses of old TaxonComparator #3338
Cleanup
Add Orthography Rejected to NomenclaturalStatusType #5649
Improve sort order within a homotypic group (new Comparator) #3338
Fix deduplication problem with list order #5652
TaxonNodeByNameComparator is not a component anymore and add configurable delete method for media
Add cultivated, presence questionable to PresenceAbsenceTerms #5443
workaround for #5590
workaround for delete of polytomous keynodes, because of null values in children list
Add post-separator to better handle tagged text
Add reported in error static method
Fix bug in TextData factory method.
Minor
Add separator after nom status in taxon titleCache #5576
Fix for DnaSample relation to Identifier, Annotations, etc.
Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more generic
Fix javassist error for specimen cache strategy loading #5545
Merge branch 'hotfix/3.12.3' into develop
Conflicts: cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java
Implement preliminary Specimen cache strategy using facade cache strategy
Allow recognizing forma in ranks
Use correct column length annotation #5535
Javadoc
Fix NPE in DistributionNodeByAreaLabelComparator
Add commented base code for guessBasionym function to Homotypical group
resolving conflicts after merge of ticket_4716 into develop
Some minor markup routine updates
add null check for delete and minor
organizing imports
#4716 reduicing clutter in the lucene index and solving performance problems which probably fixes #4277 and #3663
#4761 removing @Indexed from abstract base classes since hibernate now fully supports polymorph class hierarchies
#4761 removing @Field annotation from CdmBase.id which has become obsolete
index creation without errors, most lucene search test working again
changes for #4960 and #4959
first steps to make lucene working again
#4716 temporarily making 3 fieldnames lowercase to prevent from trouble with new hibernate naming strategy, needs to be reverted later, see #5369
Update some more hibernate mapping nameings #4716 and #5369
Fix upgrade issues after rebase #4716
Fix issues after rebase #4716
migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
Upgrade to hibernate 5 with persistence tests running #4716
Fix bug for embeddable classes in AdvancedBeanInitializer #5383
fixing #4878
Add orphanRemoval to SingleReadAlignment set of Sequence #5200
fixing #5303
Set singleRead to null when removing SingleReadAlignment from sequence to avoid "object would be re-saved" #5200
Revert "accept the change from a number to null in TimePeriod fields #5319"
This reverts commit a3960fa7c279f2aa9fafbefde098c529e269d382.
fix #5341 and fixing deletion of specimen
#5297 Refactor ProgressMonitorController, Add Remoting Progress monitor
#5297 Add progress monitor service, Add test services
#5297 Add monit import method
#5297 Update no. of work units
#5297 Add new thread class for remoting monitors
#5297 Add owner field to monitor thread and user checks in service...
Minor cleanup
Fix test in dataportal with strict bean initalization #5077
Revert "minor"
This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.
Fix bean read/write inconsistency in Taxon and TaxonBase #5307
fix #5179 and adapting the tests because the classification argument is needed now
accept the change from a number to null in TimePeriod fields #5319
Merge branch 'ticket-5066' into develop
Conflicts: cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/PostMergeEntityListener.java
minor clean ups
Add cascade merge to members field