#5297 Refactor ProgressMonitorController, Add Remoting Progress monitor
#5297 Add progress monitor service, Add test services
#5297 Add monit import method
#5297 Update no. of work units
#5297 Add new thread class for remoting monitors
#5297 Add owner field to monitor thread and user checks in service...
Minor cleanup
Fix test in dataportal with strict bean initalization #5077
Revert "minor"
This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.
minor
Fix bean read/write inconsistency in Taxon and TaxonBase #5307
fix #5179 and adapting the tests because the classification argument is needed now
accept the change from a number to null in TimePeriod fields #5319
Merge branch 'ticket-5066' into develop
Conflicts: cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/PostMergeEntityListener.java
minor clean ups
Add cascade merge to members field
#5281 Make SingleReadAlignment.Shift serializable
#5299 Add new entity listener and event firing
#5259 Add method to init defaul terms
#5249 Correct if statements
#5223 Copy utility method from service to derived unit
Implement hasCharacterData and isCharacterData. And fix characterData semantics.
move specimen.getCharacterData to model
Document new initListener method (#5161)
Implement taggedTitle for taxon base #5229
Set sequence to null when removing a single read #5200
#5138, #5102 Fix cascade delete orphan error for address list in contact entity
removing System.out.println
changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person
#5161 Add initListener method to CdmBase object
add @Audited to startNumber
changes for deleting polytomous key nodes
Revert final qualifier after discussion in #5102
adding IdInVocabulary to the toString representation of NamedAreas
#5100 Fix default language for remoting
Intialise addresses in declaration to avoid orphan cascade issue
#5067 Updates for remoting derivate hierachy views
Update service layer calls to use uuids, Add property paths to find call for performance tuning
Fix taxon node comparator handling #4226
Fix missing protected evaluation for Taxon titleCache #5018
Fix singleton constructor with specimen types
Do not set consensus sequence of single read alignment to null when deleting the alignment
Add getTermByIdInVoc method to vocabularies
Fix unparsed sections and subsections #4764
Fix possible but in FeatureNode sortindex creation
See similar issue in TaxonNode sortindex creation.
Fix sortindex computation in TaxonNode
After commit from 2015-06-18 the sortindex was computed slightly different. In some cases the parent was not deproxied anymore and therefore the parent.childNodes always returned the empty list of the proxy object instead of returning the actual childrens list.
Improve E+M post import methods #3979
Add publisher role uuid and clean up FirstDataInserter #3979
Rename remaining occurrences of xxxAuthorTeam #4968
Rename remaining occurrences of combinationAuthorTeam and basionymAuthorTeam in code and other files
Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
forgot to check in the changes
add @Audited to the argument type
fix #4976 Titlecache for new vocabularies not filled correctly
minor cleanup
correcting wrong merge
Merge branch 'master' of wp5.e-taxonomy.eu:/var/git/cdmlib into remoting-4.0
Conflicts: cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/name/NonViralName.java cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/INameService.java...
jaxb annotation fixed for agentRelations #3583
rename authorTeam -> authorship #4332 for name authors
merge trunk into 3.6 branch
last changes for #4869
changes for #3998
fix setStatisticalValue method
fix test and add factory method #3583
some cleanup, renaming and a test for TaxonNodeAgentRelation #3583
more getters/adders, update script, vocabulary and test vocabulary for TaxonNodeAgentRelation #3583
first implementation of TaxonNodeAgentRelation #3583
merging trunk into 3.6 branche
fix for #4869
minor changes, renaming, code formatting, javadoc
improve handling of titlecache in terms #3148
moving UuidAndTitleCache from model to persistence. #4799
Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841
merge trunk into model change 3.6
Conflicts: cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTerm.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/common/DefinedTermBase.java cdmlib-model/src/main/java/eu/etaxonomy/cdm/model/reference/Reference.java...
added id to uuidAndTitleCache
AnnotatableEntity : removed dynamic generation of marker set Taxon : reverted TaxonServiceImpl : added affected object on delete
fixing further bean field property mapping probelm, contributes to #3841: resolve bean inconsistencies
adding missing @Transient
make the taxonomic tree editable in natural order (see #3771), adding comparator
privates for uuidAndTitleCache
add update script and JAXB annotation for sequence positions #4743
Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing
change SupportedCategoricalEnumeration and RecommendedModifierEnumeration from OneToMany to ManyToMany #4843
Implement bidirectionality for QuantitativeData-StatisticalMeasurementValue #4845
fix stateData removal #4840
add validation rule request for idInVocabulary #3379, #4245
fix remove hybrid method (related to #2576)
added not blank handling for potential notEmpty strings #4653
added not blank handling for potential notEmpty strings #4653 , solving compilation issues
fix move description element bug #4806
fix XmlType.propOrder #4840
implement bidirectionality on CategoricalData-StateData #4840