Add preferred stable URI to SpecimenOrObservation #5606
Add base structure for model update to 4.0
Fix sort order for nom illeg with date #3338
Include nom. illeg. in homotypic group ordering #3338
fix #5669
#5679 catching and ignoring LIEs during the attempt to clean up NULL items in sets
fixing LIE in webservice: taxonNode.sortIndex needs to be @Transient
Update javadoc and illegitimate status for NomenclaturalStatusType.CONS_DESIG #5662
Minor change in order
fix move taxonnode and remove null values from childrenlists in several places
Remove nomenclatural status type ined. as it is a duplicate for nom. provis. (related to Cuba #5443)
Added nom. cons. des. status #5662
#5659 fixing hibernate search indexing annotation
Some additional tests for sorting homotypical groups #3338
Add circular check for homotypicgouptaxon comparator #3338
Include rank comparison in HomotypicGroupTaxonComparator #3338
minor
Fix bug in HomotypicGroupTaxonComparator #3338
Ordering of multiple Homotypic Groups #3338
Some cleanup for HGTaxonComparator #3338
Apply HomotypicGroupTaxonComparator to all existing uses of old TaxonComparator #3338
Cleanup
Add Orthography Rejected to NomenclaturalStatusType #5649
Improve sort order within a homotypic group (new Comparator) #3338
Fix deduplication problem with list order #5652
TaxonNodeByNameComparator is not a component anymore and add configurable delete method for media
Add cultivated, presence questionable to PresenceAbsenceTerms #5443
workaround for #5590
workaround for delete of polytomous keynodes, because of null values in children list
Add post-separator to better handle tagged text
Add reported in error static method
Fix bug in TextData factory method.
Minor
Add separator after nom status in taxon titleCache #5576
Fix for DnaSample relation to Identifier, Annotations, etc.
Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more generic
Fix javassist error for specimen cache strategy loading #5545
Merge branch 'hotfix/3.12.3' into develop
Conflicts: cdmlib-services/src/main/java/eu/etaxonomy/cdm/api/service/TaxonNodeServiceImpl.java cdmlib-services/src/test/java/eu/etaxonomy/cdm/api/service/TaxonServiceSearchTest.java
Implement preliminary Specimen cache strategy using facade cache strategy
Allow recognizing forma in ranks
Use correct column length annotation #5535
Javadoc
Fix NPE in DistributionNodeByAreaLabelComparator
Add commented base code for guessBasionym function to Homotypical group
resolving conflicts after merge of ticket_4716 into develop
Some minor markup routine updates
add null check for delete and minor
organizing imports
#4716 reduicing clutter in the lucene index and solving performance problems which probably fixes #4277 and #3663
#4761 removing @Indexed from abstract base classes since hibernate now fully supports polymorph class hierarchies
#4761 removing @Field annotation from CdmBase.id which has become obsolete
index creation without errors, most lucene search test working again
changes for #4960 and #4959
first steps to make lucene working again
#4716 temporarily making 3 fieldnames lowercase to prevent from trouble with new hibernate naming strategy, needs to be reverted later, see #5369
Update some more hibernate mapping nameings #4716 and #5369
Fix upgrade issues after rebase #4716
Fix issues after rebase #4716
migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
Upgrade to hibernate 5 with persistence tests running #4716
Fix bug for embeddable classes in AdvancedBeanInitializer #5383
fixing #4878
Add orphanRemoval to SingleReadAlignment set of Sequence #5200
fixing #5303
Set singleRead to null when removing SingleReadAlignment from sequence to avoid "object would be re-saved" #5200
Revert "accept the change from a number to null in TimePeriod fields #5319"
This reverts commit a3960fa7c279f2aa9fafbefde098c529e269d382.
fix #5341 and fixing deletion of specimen
#5297 Refactor ProgressMonitorController, Add Remoting Progress monitor
#5297 Add progress monitor service, Add test services
#5297 Add monit import method
#5297 Update no. of work units
#5297 Add new thread class for remoting monitors
#5297 Add owner field to monitor thread and user checks in service...
Minor cleanup
Fix test in dataportal with strict bean initalization #5077
Revert "minor"
This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.
Fix bean read/write inconsistency in Taxon and TaxonBase #5307
fix #5179 and adapting the tests because the classification argument is needed now
accept the change from a number to null in TimePeriod fields #5319
Merge branch 'ticket-5066' into develop
Conflicts: cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/dao/hibernate/common/CdmEntityDaoBase.java cdmlib-persistence/src/main/java/eu/etaxonomy/cdm/persistence/hibernate/PostMergeEntityListener.java
minor clean ups
Add cascade merge to members field
#5281 Make SingleReadAlignment.Shift serializable
#5299 Add new entity listener and event firing
#5259 Add method to init defaul terms
#5249 Correct if statements
#5223 Copy utility method from service to derived unit
Implement hasCharacterData and isCharacterData. And fix characterData semantics.
move specimen.getCharacterData to model
Document new initListener method (#5161)
Implement taggedTitle for taxon base #5229
Set sequence to null when removing a single read #5200
#5138, #5102 Fix cascade delete orphan error for address list in contact entity
removing System.out.println
changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person
#5161 Add initListener method to CdmBase object
add @Audited to startNumber
changes for deleting polytomous key nodes
Revert final qualifier after discussion in #5102