Add Feature.Notes to Markup-Transformer

minor

make the csv export more configurable

fix NPE of Caryophyllales output test

Remove generics from Reference in cdmlib (except for cdmlib-model) #5830

Remove bidirectionality for supplemental data #5743

Remove compile error

minor

minot

smaller changes for fauna europaea import and csvNameExport

add query to ABCDImportConfigurator

Add method for getting nomenclatural status

Apply HomotypicGroupTaxonComparator to all existing uses of old
TaxonComparator #3338

fix the taxeditor tests

Add MySQL to Source class

Minor

Fix potential NPE

Minor

latest changes to markup import

Fix CCE in DefinedTermDaoImpl.getPartOf (#5556) and make deproxy more
generic

Latest changes to markup import

Add invasive to MarkupTransformer

Add new status to Markup-Transformer

Improve status handling in markup import

Latest changes to markup import

Minor changes to ResultSetPartitioner

Latest fixes for markup import

Minor

Latest changes markup import

improve getPresenceTerm and getNamedArea in CdmImportBase

Add originalRecord to excel import state and cleanup

Clean up CdmImportBase

minor changes to ExcelImporterBase

Cleanup DbImportStateBase

resolving conflicts after merge of ticket_4716 into develop

Latest changes for Markup Transformer

Add PostGreSQL to Source class and clean up PostgreSQL DatabaseType

Add features for FM vol8

Some minor markup routine updates

organizing imports

Show complete stacktrace in import report

Fix counting of specimens created in ABCD import report

Parse spatial data for gathering event in ABCD import #5169

Set Unit/Notes and Gathering/Notes in ABCD import #5168

Import missing parameters for ggbn ABCD import

• some refactoring

Fix import for max elevation

Minor generics changes for TcsXmlExport

Upgrade to hibernate 5 with persistence tests running #4716

Further adapt to new jackson and new lucene version #4716

Update jdbc-driver versions #4716

Refactored import return type from boolean to ImportResult

Move import report to import state super class

clean up csvNameExport

#5297 Move monitor thread api to super interface, Implement monitor feedback timeout

#5297 Add monitor feedback timeout, Cleanup code

#5297 Make result, feedback objects in remoting monitor serializable, Update test service with monitor feedback

#5297 Add cancel and waitForFeedback functionality

Correct work units

#5297 Refactor ProgressMonitorController, Add Remoting Progress monitor

#5297 Add progress monitor service, Add test services

#5297 Add monit import method

#5297 Update no. of work units

#5297 Add new thread class for remoting monitors

#5297 Add owner field to monitor thread and user checks in service...

Minor cleanup

Fix NPE in ABCD import collection matching

• also added for-loop break

Add stack trace to import report

Fix property path in CsvNameExport #5344

Revert "minor"

This reverts commit 64367d007ba404e037ccc2b6794b46c4f1f321bc.

minor

fix csv export

resolving conficts in project versions after hotfixrelease

adapt CacheUpdater to changes in ImportConfiguratorBase
minor changes in TcsXmlNameImport

minor

minor

fixing move Accepted taxon to synonym

Enhance ABCD import report

changes for tcs import, fixing taxonnodecomparator, polytomouskey deletion and converting from person to team and team to person

Refine rank parsing

• if rank cannot be parsed the taxon will be created as is with a single taxon node without any parent taxon node but the classification itself
• some code refactoring
• avoid NPEs

minor

Adapt rank split for CoL to higher>species

Fix CoL import (taxon relationship split)

Enhance ignored import due to already existing specimens

minor

Adding filter functionality to stream converter (not yet ready)

#5130 Extend cdmlib import architecture to allow for remoting and Add import methods to IOService

#5129 Extend export classes to allow for remote exports

Remove filter from stream partitioner

Add support for ABCD 2.0.6 in UnitAssociationParser

WARNING: head commit changed in the meantime¶

Log ignored specimens in import report

Allow DwC-A import to filter streams and fix database mapping

Fix for export

Add two new test files

Enhance name parsing

• more logging
• fixed rank assignment

Error logging for name parsing

• advanced readability

Enhance name parsing

• added more error logging
• avoid creating duplicate taxon names due to parsing problems

Remove parseNameAutomatically flag

Refactor ABCD import

• use association wrapper to store prefix
• correctly push and pop import state
• only delete field unit if it has no other links to objects

Refactor ABCD import

• removed "determination on field unit level" flag
• parse unit associations recursively
• removed field unit from import state
• enhanced unit association handling concerning field units and ereivation events

Fix taxon existance check

Add import report logging to utility methods

Catch exception instead of throwing them

Lets the methods return

Error loggind during import

minor

Add exception during import to report

Fix classification handling for new and exisiting taxa