cleanup
ref #9809 include new authors in result.
ref #9809 remove first "line" form source reference detail
ref #9809 add the source reference to newly added authors
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont. II)
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont.)
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference
ref #9890 make the configuration of the ImportDeduplicationHelper configurable per import class by overriding factory method
ref #9890 move importDeduplicationHelper to import state and include state in helper (cont.)
ref #9890 move importDeduplicationHelper to import state and include state in helper (state not yet used in methods)
ref #9888 add book section handling to RIS import
ref #824 rename Rank.getByNameXXX to getByLatinNameXXX
ref #694 add DescriptionElementService and move some methods
cleanup and add null handling for isDeletable
remove further featureTree and featureNodeService occurrences
cleanup and remove usage of feature tree service
ref #9855 remove image duplicates for MediaSpecimen in ABCD import
Revert "rename getMediainHierarchy to getMediaInHierarchy"
This reverts commit 10a9a8cd7811b77de3d877298448c650a3e117e4.
rename getMediainHierarchy to getMediaInHierarchy
add typedesignation only to designated name
some refactoring for NonReferencedObjectsDeleter
remove seperate config package for NonReferencedObjectsDeleterConfigurator
adapt getIdentifier methods (cont.)
adapt getIdentifier methods
fix #9786 implement CY and fix PY for RIS import (and fix Source handling for in-references)
Cleanup RIS and Endnote tests
ref #9771 first incomplete version of Cdm2CdmVocabularyImport
ref #9778, ref #9755, ref #9754, ref # 9757 split grex and add new ranks lusus, subproles and subgrex
ref #9755 update cultivarName->cultivarEpithet
improve attribute names and handle all name identifier in cdmlight
ref #9752 make it possible to add source with original information for imports
ref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle
ref #9737: add dummy lines to cdmLight export
ref #9736: add name_fk and preferred source fk to specimen type table
ref #9736: new table for (specimen)typedesignations
ref #9735: add type specimen to specimen table
adapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration
improve logging for existing identifiers in IdentifierImport
add factory method to CdmLightExportConfigurator
fix null check
cleanup CdmLightClassificationExport
fix typedesignation String with citation
remove unused methods in AgentDao and AgentService (cont.)
ref #9646: add unspecific non reflations
ref #9664, ref #4311 improve cache update for teams
ref #9646: second name of relation should be in italics, too
smaller changes in CdmLIghtExport
ref #9664 remove setting person setNomenclaturalTitle during cache update and avoid recomputing nomTitleCache and collectorTitleCache (not sure what this is needed for)
ref #9664 first implementation for TeamOrPersonBase.nomenclaturalTitleCache (update script still missing)
ref #4311 first implementation for TeamOrPersonBase.collectorTitle
use shortCitation with brackets for sec references
fix #9030 add reverse order pattern for monthPattern with extreme values
ref #9646: add name relationships to homotypicgroupString and add type des reference
ref #9645, #9646: add namerelations to homotypicGrouString and reference to type/specimenstatement
minor
ref #9624 use short citation without brackets in cdmlight reference export
add appended phrase to scientific name, taxon and synonym tables
ref #9624, ref #7305, ref #9326 refactor team formatting all over cdmlib (including et al. handling for biblio references)
ref #9604 split to OriginalSourceFormatter
add comment to random uuid for condensed distribution
fix #9617 rename ICNB to ICNP in cdmlib
fix exception in cdmlight
cdmlight: move condensed distribution string to simple facts table
avoid NPE
ref #9607 replacing class local factory methods and heplers in CdmImageInfo by service layer factory classes and metadata 'reader' class
fix handling of references for misapplied names
rename DefaultReferenceCacheStrategy to ReferenceDefaultCacheStrategy
ref #9595 add SampleDesignation uuid to DefinedTerm
remove generics from Identifier class
ref #6542 add warnAndDoNotOverrideIfExists to identifier import
ref #6542 update Identifier import to support value update and more logging
add updateIdentifier to IdentifierImport
ref #9574: add html tags to nameTypeDesignation string
ref #9515: remove second call setIndividualsAssociationDescriptionPerTaxon
ref #9566 use invalid designation symbol for all names with nomenclatural standing "invalid"
adapt symbol for misspellings
adapt NomenclaturalStatus String in CdmLight
cleanup and fix compile error related to ref #9515