cleanup
ref #10092 adapt markup import to FdG requirements (fixing errors)
fix #10089 final fixes for TypeDesignationSet formatting ordered by type status (cont.)
ref #10089 rename TypeDesignationSetManager to TypeDesignationSetContainer in cdmlib
ref #10087 make placement source and placement source FK explicit columns and refactor test (also ref #10081 )
ref #10081 add secundum name used in source to cdmlight
ref #10087 add taxon node source to status notes in cdmlight
cleanup and remove strange IkeyPlusImport properties files in io/src/test/resources/main
fix CCE in IOServiceImpl for URI based imports
cleanup and javadoc
rename WordTermExport
code cleaning
ref #10067, ref #3722, ref #8127 fully remove TaxonNode sortindex code from TaxonNode and CdmLight
ref #3722, ref #8127, ref #10067 fully remove sortindex updating and collection null handling workaround from TaxonNode
minor
ref #10067 byteCodeProvider for HibernateConfiguration and factory methods
ref #9359 upgrade cdmlib to log4j 2
ref #10067 adapt IdentifiableEntity.cacheStrategy handling to avoid problem with unhandled generic handling and transient getter
ref #9932 handle status correctly in ImportDeduplicationHelper.reset()
ref #9965: adapt to changes in derivedUnit facade
Replace cybertaxonomy.eu by cybertaxonomy.org in cdmlib (cont.)
ref #9932 add uuid method for refobject retrieval for imports
ref #9918 improve deduplication handling for imports
cleanup (cont.)
ref #9918 improve cache initialization for imports
ref #9918 distinguish default and parsedEntity deduplication in ImportDeduplicationHelper and switch order of entities to be compared
ref #9607 remove redundant method in IMediaInfoFactory
ref #9809 include new authors in result.
ref #9809 remove first "line" form source reference detail
ref #9809 add the source reference to newly added authors
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont. II)
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference (cont.)
ref #9889 add direct matching on persistence to deduplication helper and replace for reference.author and .inReference
ref #9890 make the configuration of the ImportDeduplicationHelper configurable per import class by overriding factory method
ref #9890 move importDeduplicationHelper to import state and include state in helper (cont.)
ref #9890 move importDeduplicationHelper to import state and include state in helper (state not yet used in methods)
ref #9888 add book section handling to RIS import
ref #824 rename Rank.getByNameXXX to getByLatinNameXXX
ref #694 add DescriptionElementService and move some methods
cleanup and add null handling for isDeletable
remove further featureTree and featureNodeService occurrences
cleanup and remove usage of feature tree service
ref #9855 remove image duplicates for MediaSpecimen in ABCD import
Revert "rename getMediainHierarchy to getMediaInHierarchy"
This reverts commit 10a9a8cd7811b77de3d877298448c650a3e117e4.
rename getMediainHierarchy to getMediaInHierarchy
add typedesignation only to designated name
some refactoring for NonReferencedObjectsDeleter
remove seperate config package for NonReferencedObjectsDeleterConfigurator
adapt getIdentifier methods (cont.)
adapt getIdentifier methods
fix #9786 implement CY and fix PY for RIS import (and fix Source handling for in-references)
Cleanup RIS and Endnote tests
ref #9771 first incomplete version of Cdm2CdmVocabularyImport
ref #9778, ref #9755, ref #9754, ref # 9757 split grex and add new ranks lusus, subproles and subgrex
ref #9755 update cultivarName->cultivarEpithet
improve attribute names and handle all name identifier in cdmlight
ref #9752 make it possible to add source with original information for imports
ref #9729, #9728, #9664 remove calls to deprecated method setNomenclaturalTitle
ref #9737: add dummy lines to cdmLight export
ref #9736: add name_fk and preferred source fk to specimen type table
ref #9736: new table for (specimen)typedesignations
ref #9735: add type specimen to specimen table
adapt setter for CdmLightExportConfigurator.condensedDistributionConfiguration
improve logging for existing identifiers in IdentifierImport
add factory method to CdmLightExportConfigurator
fix null check
cleanup CdmLightClassificationExport
fix typedesignation String with citation
remove unused methods in AgentDao and AgentService (cont.)
ref #9646: add unspecific non reflations
ref #9664, ref #4311 improve cache update for teams
ref #9646: second name of relation should be in italics, too
smaller changes in CdmLIghtExport
ref #9664 remove setting person setNomenclaturalTitle during cache update and avoid recomputing nomTitleCache and collectorTitleCache (not sure what this is needed for)