EDIT

Set IPNI Service Test preliminary to ignore

Unignore IPNI Test

Preliminary set IPNI tests to ignore

Adapt log4j.properties to hibernate deprecated logging problem

#5479 preliminar solution for user defined presenceAbsence terms vocabularies

resolving conflicts after merge of ticket_4716 into develop

Fix TransientObjectException for distribution map #5357

Test do not yet work fully and are commented

Cleanup description generics (related to #5357)

Increase Gbif webservice version number #4571

organizing imports

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Upgrade to hibernate 5 with persistence tests running #4716

Further adapt to new jackson and new lucene version #4716

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

#2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed

#5349 Add http invoker service config files to cdmlib-ext (for editgeo service) and cdmlib-io (currenlty empty)

remove ignore from IPNI test

Ignore Ipni test preliminary

Preliminary ignore IPNI test

Update test database schema to allow null for consensus sequence

Update test database schema to allow null for consensus sequence

Merge branch 'develop' into abcd

#5112 - hiding fall back areas from the hierachchic distribution representation

Increase reference titlecache in test DBs

Check capabilites of BioCase provider for supported ABCD schemas

Fix UniqueKey issue for sequence ciations

#2988 avoiding NPE and allowing empty omitlevels (bug fix)

minor code cleaning

#4408 removing occurences of fallbackAreaMarkerType in methods and renaming parameter in controller

merging fallbackAreaFilter rule into hiddenArea rule

all rules separated

implementing fallbackArea rule into DescriptionUtility.filterDistrubution for EuroPlusMed - #4408

adapting tests to changes in EuroPlusMedCondensedDistributionComposer and DescriptionUtils
- testGetWebServiceUrlCountry() : removing restriction on specific order of area status parameters
- testGetCondensedDistribution() : fixing unappropriate test data

correcting the cleanup of sub areas labes in condensed distributions

applying subAreaPreference exclusively for maps

correctly assigning INTRODUCED_NATURALIZED to n=naturalizes for condensed distribution - #3907

removing obsolete warning from log - #3907

some bugfixes in CondensedDistribution composition code - #3907

minor documentation cleaning

composition of condensed distribution fully implemented - #3907

base framework for condensedDistributions implemented - #4911

performance: avoiding second distribution filtering when creating the DistributionServiceRequestParameterString - #4911

replacing 'non-java-doc by {@inheritDoc}

Improve E+M post import methods #3979

Add E+M vocabulary uuid to E+M-Transformer

Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968

• added missing table column to test DB

rename authorTeam -> authorship #4332 for name authors

first implementation of TaxonNodeAgentRelation #3583

Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841

fix tests for model 3.6

merge trunk into model change 3.6

further performance improvements: - better autoinitialization of collection items, - fixing bug in AdvancedBeanInitializer: adding missing LEFT to JOIN FETCH

speed up of DistributionTree.orderAsTree() by factor 1.6

performance improvement by 42% by using default initstrategy for composeDistributionInfoFor()

Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing

Add hasMoreMembers to Team, update script still missing #4791

• added wrapper for map service query to have access to the data points
  • used data points as parameters for the bounding box of the point distribution map

unignore edit geoservice test

fix test environment for Identifier being Annotatable #4673

fixing persistence tests on AgentBase.collectorTitle #4311

add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311

merge validation2 and model 3.5 into trunk

• reverted comment of test

• fixed java doc

switch on IPNI tests

merge cdmlib-ext from validation branch to trunk

• change visibility of createTestDataSet to public

merge-update from trunk

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

some bugfixes to new Amplification modelling #4541

merge-update from trunk

separate Amplification and AmplificationResult.java #4541

minor

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

merge-update from trunk

merge PresenceTerm and AbsenceTerm #4521

removing old obsolte code

Add institution to DerivationEvent and Amplification

add DnaMarker to Primer #4470

further changes to DnaQuality #4434 and update script for ValidationFramework alpha version

make primer.sequence a SequenceString #4139

add i18n description for Classification. #4428

Geo and time scope for Classifications #3699

first implementation for DnaQuality #4434

rename Reference.authorTeam -> authorship #4432

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

rename Reference.authorTeam -> authorship #4432

remove series from Reference #4293

fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers

adapt tests to 3.4

merge-update from trunk

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

merge-update from trunk; added import preference to add media as media specimen

updating TODO

• fixed parsing of elevation in GBIF response

merge-update from trunk

solving #4294 (order of map legend entries conforms to term order)