Add status for doubtfully native: reported in error #5682
First implementatio for Cuban Condensed Distribution String #5682
Symbols for Cuba Condensed Distribution String added
CondensedDistributionCompose for FloraCuba
Preliminary ignore IPNI tests
Implement natural ordering for distributions in data portal #5677
Unignore IPNI Service test again
Set IPNI Service Test preliminary to ignore
Unignore IPNI Test
Preliminary set IPNI tests to ignore
Adapt log4j.properties to hibernate deprecated logging problem
#5479 preliminar solution for user defined presenceAbsence terms vocabularies
resolving conflicts after merge of ticket_4716 into develop
Fix TransientObjectException for distribution map #5357
Test do not yet work fully and are commented
Cleanup description generics (related to #5357)
Increase Gbif webservice version number #4571
organizing imports
migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716
Upgrade to hibernate 5 with persistence tests running #4716
Further adapt to new jackson and new lucene version #4716
Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate validator #4716 and #4702
#2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed
#5349 Add http invoker service config files to cdmlib-ext (for editgeo service) and cdmlib-io (currenlty empty)
remove ignore from IPNI test
Ignore Ipni test preliminary
Preliminary ignore IPNI test
Update test database schema to allow null for consensus sequence
Merge branch 'develop' into abcd
#5112 - hiding fall back areas from the hierachchic distribution representation
Increase reference titlecache in test DBs
Check capabilites of BioCase provider for supported ABCD schemas
Fix UniqueKey issue for sequence ciations
#2988 avoiding NPE and allowing empty omitlevels (bug fix)
minor code cleaning
#4408 removing occurences of fallbackAreaMarkerType in methods and renaming parameter in controller
merging fallbackAreaFilter rule into hiddenArea rule
all rules separated
implementing fallbackArea rule into DescriptionUtility.filterDistrubution for EuroPlusMed - #4408
adapting tests to changes in EuroPlusMedCondensedDistributionComposer and DescriptionUtils - testGetWebServiceUrlCountry() : removing restriction on specific order of area status parameters - testGetCondensedDistribution() : fixing unappropriate test data
correcting the cleanup of sub areas labes in condensed distributions
applying subAreaPreference exclusively for maps
correctly assigning INTRODUCED_NATURALIZED to n=naturalizes for condensed distribution - #3907
removing obsolete warning from log - #3907
some bugfixes in CondensedDistribution composition code - #3907
minor documentation cleaning
composition of condensed distribution fully implemented - #3907
base framework for condensedDistributions implemented - #4911
performance: avoiding second distribution filtering when creating the DistributionServiceRequestParameterString - #4911
replacing 'non-java-doc by {@inheritDoc}
Improve E+M post import methods #3979
Add E+M vocabulary uuid to E+M-Transformer
Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968
rename authorTeam -> authorship #4332 for name authors
first implementation of TaxonNodeAgentRelation #3583
Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841
fix tests for model 3.6
merge trunk into model change 3.6
further performance improvements: - better autoinitialization of collection items, - fixing bug in AdvancedBeanInitializer: adding missing LEFT to JOIN FETCH
speed up of DistributionTree.orderAsTree() by factor 1.6
performance improvement by 42% by using default initstrategy for composeDistributionInfoFor()
Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing
Add hasMoreMembers to Team, update script still missing #4791
unignore edit geoservice test
fix test environment for Identifier being Annotatable #4673
fixing persistence tests on AgentBase.collectorTitle #4311
add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311
merge validation2 and model 3.5 into trunk
switch on IPNI tests
merge cdmlib-ext from validation branch to trunk
merge-update from trunk
some bugfixes to new Amplification modelling #4541
separate Amplification and AmplificationResult.java #4541
minor
fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence
merge PresenceTerm and AbsenceTerm #4521
removing old obsolte code
Add institution to DerivationEvent and Amplification
add DnaMarker to Primer #4470
further changes to DnaQuality #4434 and update script for ValidationFramework alpha version
make primer.sequence a SequenceString #4139
add i18n description for Classification. #4428
Geo and time scope for Classifications #3699
first implementation for DnaQuality #4434
rename Reference.authorTeam -> authorship #4432
adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382
remove series from Reference #4293
fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers