EDIT

Unignore IPNI Service

Latest changes to CubaDistributionComposer

Add test for condensed distribution string #5682

Preliminary ignore IPNI tests

Unignore IPNI Service test again

Set IPNI Service Test preliminary to ignore

Unignore IPNI Test

Preliminary set IPNI tests to ignore

Adapt log4j.properties to hibernate deprecated logging problem

resolving conflicts after merge of ticket_4716 into develop

Fix TransientObjectException for distribution map #5357

Test do not yet work fully and are commented

Increase Gbif webservice version number #4571

organizing imports

migrate to hibernate 5 for cdmlib-services and cdmlib-ext #4716

• (except for hibernate search tests)
• including new spring-config structure

Upgrade to hibernate 5 with persistence tests running #4716

Upgrade to spring 4.2.2, spring-security 4.0.2 and latest hibernate
validator #4716 and #4702

remove ignore from IPNI test

Ignore Ipni test preliminary

Preliminary ignore IPNI test

Update test database schema to allow null for consensus sequence

Update test database schema to allow null for consensus sequence

Increase reference titlecache in test DBs

Fix UniqueKey issue for sequence ciations

merging fallbackAreaFilter rule into hiddenArea rule

all rules separated

adapting tests to changes in EuroPlusMedCondensedDistributionComposer and DescriptionUtils
- testGetWebServiceUrlCountry() : removing restriction on specific order of area status parameters
- testGetCondensedDistribution() : fixing unappropriate test data

composition of condensed distribution fully implemented - #3907

base framework for condensedDistributions implemented - #4911

performance: avoiding second distribution filtering when creating the DistributionServiceRequestParameterString - #4911

• added missing table column to test DB

rename authorTeam -> authorship #4332 for name authors

first implementation of TaxonNodeAgentRelation #3583

Simplify table structure for CategoricalData-StateData and and QuantitativeData_StatisticalMeasurementValue #4841

fix tests for model 3.6

Adding firstSeqPosition, leftCutPosition and rightCutPosition to SingleReadAlignment #4743 , Update script still missing

Add hasMoreMembers to Team, update script still missing #4791

unignore edit geoservice test

fix test environment for Identifier being Annotatable #4673

fixing persistence tests on AgentBase.collectorTitle #4311

add collectorTitle and protectedCollectorTitleCache to Team(orPersonBase) #4311

merge validation2 and model 3.5 into trunk

• reverted comment of test

switch on IPNI tests

merge cdmlib-ext from validation branch to trunk

• change visibility of createTestDataSet to public

merge-update from trunk

• added abstract method createTestData() to CdmIntegrationalTest
  • method should be used for generatin test XML data sets
  • making it abstract and enforcing implementation in sub classes ensures that the same structure is used thus making it easier for the developer to find similar examples....

some bugfixes to new Amplification modelling #4541

separate Amplification and AmplificationResult.java #4541

fixing test for SingleReadAlignment and removal of SpecAndObs_Sequence

merge PresenceTerm and AbsenceTerm #4521

Add institution to DerivationEvent and Amplification

add DnaMarker to Primer #4470

further changes to DnaQuality #4434 and update script for ValidationFramework alpha version

make primer.sequence a SequenceString #4139

add i18n description for Classification. #4428

Geo and time scope for Classifications #3699

first implementation for DnaQuality #4434

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

rename Reference.authorTeam -> authorship #4432

remove series from Reference #4293

fix update script to run with MySQL, add TermType IdentifierType, add List index on identifiers

adapt tests to 3.4

merge-update from trunk

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

merge-update from trunk

• added timeout and null check

merge-update from trunk

• added line limit for web service response

• fixed BioCaseServiceWrapperTest
  • fixed info log

merge-update from trunk

• enhanced BioCaseQuery and test

• merge update from trunk

rename getByIdInVocabulary

implementation for #4268 (allow defining custom presence and absence term colors for EditGeoServiceUtilities) and removing obsolete termservice parameters

merge-update from trunk

• removed unused query method
  • removed default access point
  • adapted test

reverting temp fix made for https://dev.e-taxonomy.eu/trac/ticket/2707#comment:24 by configuration in EditGeoServiceUtilities - but leaving code for now

add original label info to derived unit #4218

• fixed documentation

• deleted invalid assert statement

• completed implementation of querying for the original unit from a GBIF response

• added service methods for querying original record via BioCASE if found in GBIF response

• extended GbifResponse and BioCase services to query for a single record with a specific unitID

• commented failing test

• added class GbifRespone which wraps one DerivedUnit returned of the parsed GBIF JSON response and the datasetKey to retrieve the original record

• commented failing test

• extended test
  • added workaround for commas in URL
  • fixed parameter checking

• implemented JSON parse logic for GBIF responses
  • DerivedUnitFacades are created from the parsed results
  • implemented/adapted test

• added dateFrom and dateTo to OccurrenceQuery

• added gbif external service for querying GBIF
  • added gbif and biocase service to new package
  • added temporary test

removed ignore

ignore tests for release

change log4j properties

fix GeoServiceTest

fix missing idInVocabulary for countries; implement country mapping for EditGeoService (#3452, #3651)

• fixed typo

reverting back the cdm application configuration refatoring