EDIT

#5479 preliminar solution for user defined presenceAbsence terms vocabularies

resolving conflicts after merge of ticket_4716 into develop

Fix TransientObjectException for distribution map #5357

Test do not yet work fully and are commented

Cleanup description generics (related to #5357)

Increase Gbif webservice version number #4571

organizing imports

Further adapt to new jackson and new lucene version #4716

#2273 removing HACK: hardcoded distribution status colors for cyprus a no longer needed

#5112 - hiding fall back areas from the hierachchic distribution representation

Check capabilites of BioCase provider for supported ABCD schemas

#2988 avoiding NPE and allowing empty omitlevels (bug fix)

minor code cleaning

#4408 removing occurences of fallbackAreaMarkerType in methods and renaming parameter in controller

merging fallbackAreaFilter rule into hiddenArea rule

all rules separated

implementing fallbackArea rule into DescriptionUtility.filterDistrubution for EuroPlusMed - #4408

correcting the cleanup of sub areas labes in condensed distributions

applying subAreaPreference exclusively for maps

correctly assigning INTRODUCED_NATURALIZED to n=naturalizes for condensed distribution - #3907

removing obsolete warning from log - #3907

some bugfixes in CondensedDistribution composition code - #3907

minor documentation cleaning

composition of condensed distribution fully implemented - #3907

base framework for condensedDistributions implemented - #4911

performance: avoiding second distribution filtering when creating the DistributionServiceRequestParameterString - #4911

replacing 'non-java-doc by {@inheritDoc}

Improve E+M post import methods #3979

Add E+M vocabulary uuid to E+M-Transformer

Rename NonViralName.xxxAuthorTeam to xxxAuthorship #4968

further performance improvements: - better autoinitialization of collection items, - fixing bug in AdvancedBeanInitializer: adding missing LEFT to JOIN FETCH

speed up of DistributionTree.orderAsTree() by factor 1.6

performance improvement by 42% by using default initstrategy for composeDistributionInfoFor()

• added wrapper for map service query to have access to the data points
  • used data points as parameters for the bounding box of the point distribution map

• fixed java doc

merge-update from trunk

minor

merge-update from trunk

merge PresenceTerm and AbsenceTerm #4521

removing old obsolte code

rename Reference.authorTeam -> authorship #4432

adapt tests to missing Reference.series #4293 and not null constraint for test database ddl #4382

rename Reference.authorTeam -> authorship #4432

adapted tcs rdf and xml import, using apache jena for rdf import
tcs import for caryophylales
minor

updating TODO

• fixed parsing of elevation in GBIF response

solving #4294 (order of map legend entries conforms to term order)

first attempt to fix #4294 (order of map legend entries conforms to term order)

throwing exception in case vocabulary is not found

• fixed BioCaseServiceWrapperTest
  • fixed info log

• enhanced BioCaseQuery and test

adapt method name

refactoring - related to #4268 (allow defining custom presence and absence term colors for EditGeoServiceUtilities)

implementation for #4268 (allow defining custom presence and absence term colors for EditGeoServiceUtilities) and removing obsolete termservice parameters

• removed unused query method
  • removed default access point
  • adapted test

reverting temp fix made for https://dev.e-taxonomy.eu/trac/ticket/2707#comment:24 by configuration in EditGeoServiceUtilities - but leaving code for now

preliminar solution to avoid problems due to #4263 (GeoServiceArea and IGeoServiceAreaMapping should manage mapping information per layer)

• completed implementation of querying for the original unit from a GBIF response

• added service methods for querying original record via BioCASE if found in GBIF response

• extended GbifResponse and BioCase services to query for a single record with a specific unitID

• added workaround for year range queries because GBIF does not yet support eventDate as query parameter

• added class GbifRespone which wraps one DerivedUnit returned of the parsed GBIF JSON response and the datasetKey to retrieve the original record

• extended test
  • added workaround for commas in URL
  • fixed parameter checking

• added limit to GBIF query
  • added date format for date parameter
  • added missing parameters for GBIF query

• implemented JSON parse logic for GBIF responses
  • DerivedUnitFacades are created from the parsed results
  • implemented/adapted test

• added dateFrom and dateTo to OccurrenceQuery

• do not add query parameters for emtpy strings

• added gbif external service for querying GBIF
  • added gbif and biocase service to new package
  • added temporary test

fix country mapping

fixing #4172 (NPE in ext/edit/mapServiceParameters/taxonOccurrencesFor/{uuid})

fix missing idInVocabulary for countries; implement country mapping for EditGeoService (#3452, #3651)

add NomStatus vocabulary for ICZN #4085

• changed hard-coded limit to 100

reverting back the cdm application configuration refatoring

renaming ICdmApplicationConfiguration to ICdmApplicationDefaultConfiguration

adapring initstrategy for DescriptionInfoDTO service

DistributionInfoForTaxon methods implemented in services and controllers

done: #4006 (remove general map parameters from distribution and occurrence map service methods)

implementing third rule for #3904 (EuroMed: Implement filtering rules for Distributions)

implementing rule 2 and 3 for #3904 (EuroMed: Implement filtering rules for Distributions) - all existing test running successfully

removing almost all hardcoded cyprus specialties

fixing bugs regarding the shape file mapper as preparation for removing hardoded layer information for cyprus

add logging for failing test #3831

IGNORE areas for which no layer is mapped

removing unnesscary default baselayers - finally deleting commented lines

commenting also method with important information related to #965 (Return type of partOf, kindOf etc. has to be decided)

fixing class cast problem with hibernate proxy instance

fixing tests after removing baselayer & doNotReuseStyles is a workaround for a problem in the EDIT MapService, see https://dev.e-taxonomy.eu/trac/ticket/2707#comment:24

removing unnesscary default baselayers and forcing layernames to be lowercase

using idInVocabulary in EditGeoService (see #3805) and implementing mapper tool to read shapefiles and to attach the contained attribute information to NamedAreas

• some refactoring

• added ABCD paths for missing query params

• fixed NPE in BioCaseQueryGenerator

• added javadoc

• query parameters are read from wizard page
  • enhanced query's toString() method

• fixed BioCASE query XML

• added hashCode(), equals(), and toString() method to BioCaseQuery

• merged changes from campanula branch
  • added BioCASE query support to cdmlib-ext

rename getRankByAbbrev methods to getRankByIdInVoc #3479

merge trunk into cdm3.3 branch

devided TimePeriod and TimePeriodParser #3617