Revision ffd6058e
Added by Andreas Müller over 4 years ago
| cdm-pesi/src/main/java/eu/etaxonomy/cdm/io/pesi/indexFungorum/IndexFungorumSpeciesImport.java | ||
|---|---|---|
| 36 | 36 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
| 37 | 37 |
import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl; |
| 38 | 38 |
|
| 39 |
|
|
| 40 | 39 |
/** |
| 41 | 40 |
* @author a.mueller |
| 42 | 41 |
* @since 27.02.2012 |
| 43 | 42 |
*/ |
| 44 | 43 |
@Component |
| 45 | 44 |
public class IndexFungorumSpeciesImport extends IndexFungorumImportBase {
|
| 46 |
private static final Logger logger = Logger.getLogger(IndexFungorumSpeciesImport.class); |
|
| 45 |
|
|
| 46 |
private static final long serialVersionUID = -1148034079632876980L; |
|
| 47 |
private static final Logger logger = Logger.getLogger(IndexFungorumSpeciesImport.class); |
|
| 47 | 48 |
|
| 48 | 49 |
private static final String pluralString = "species"; |
| 49 | 50 |
private static final String dbTableName = "[tblPESIfungi-IFdata]"; |
| 50 | 51 |
|
| 51 |
|
|
| 52 | 52 |
public IndexFungorumSpeciesImport(){
|
| 53 | 53 |
super(pluralString, dbTableName, null); |
| 54 |
|
|
| 55 | 54 |
} |
| 56 | 55 |
|
| 57 |
|
|
| 58 |
|
|
| 59 |
|
|
| 60 | 56 |
@Override |
| 61 | 57 |
protected String getIdQuery() {
|
| 62 | 58 |
String result = " SELECT PreferredNameIFnumber FROM " + getTableName() + |
| ... | ... | |
| 64 | 60 |
return result; |
| 65 | 61 |
} |
| 66 | 62 |
|
| 67 |
|
|
| 68 |
|
|
| 69 |
|
|
| 70 |
/* (non-Javadoc) |
|
| 71 |
* @see eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase#getRecordQuery(eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportConfigurator) |
|
| 72 |
*/ |
|
| 73 | 63 |
@Override |
| 74 | 64 |
protected String getRecordQuery(IndexFungorumImportConfigurator config) {
|
| 75 | 65 |
String strRecordQuery = |
| ... | ... | |
| 80 | 70 |
""; |
| 81 | 71 |
return strRecordQuery; |
| 82 | 72 |
} |
| 73 |
|
|
| 83 | 74 |
@Override |
| 84 | 75 |
protected void doInvoke(IndexFungorumImportState state){
|
| 85 | 76 |
System.out.println("start make " + getPluralString() + " ...");
|
| 86 | 77 |
super.doInvoke(state); |
| 87 |
|
|
| 88 |
|
|
| 89 |
|
|
| 90 |
|
|
| 91 | 78 |
} |
| 92 | 79 |
|
| 93 | 80 |
@Override |
| 94 |
public boolean doPartition(ResultSetPartitioner partitioner, IndexFungorumImportState state) {
|
|
| 81 |
public boolean doPartition(@SuppressWarnings("rawtypes") ResultSetPartitioner partitioner,
|
|
| 82 |
IndexFungorumImportState state) {
|
|
| 83 |
|
|
| 95 | 84 |
boolean success = true; |
| 96 | 85 |
Reference sourceReference = state.getRelatedObject(NAMESPACE_REFERENCE, SOURCE_REFERENCE, Reference.class); |
| 97 | 86 |
ResultSet rs = partitioner.getResultSet(); |
| ... | ... | |
| 143 | 132 |
if (name.isInfraSpecific()){
|
| 144 | 133 |
state.getInfraspecificTaxaUUIDs().add(uuidTaxon); |
| 145 | 134 |
} |
| 146 |
|
|
| 147 | 135 |
} |
| 148 |
|
|
| 149 |
|
|
| 150 | 136 |
} catch (Exception e) {
|
| 151 | 137 |
e.printStackTrace(); |
| 152 | 138 |
logger.error(e.getMessage()); |
| ... | ... | |
| 156 | 142 |
return success; |
| 157 | 143 |
} |
| 158 | 144 |
|
| 159 |
|
|
| 160 |
|
|
| 161 |
|
|
| 162 |
|
|
| 163 |
|
|
| 164 |
|
|
| 165 | 145 |
private Taxon getParentTaxon(IndexFungorumImportState state, ResultSet rs) throws SQLException {
|
| 166 | 146 |
Integer genusId = rs.getInt("PreferredNameFDCnumber");
|
| 167 | 147 |
|
| ... | ... | |
| 172 | 152 |
return taxon; |
| 173 | 153 |
} |
| 174 | 154 |
|
| 175 |
|
|
| 176 | 155 |
@Override |
| 177 | 156 |
public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs, IndexFungorumImportState state) {
|
| 178 | 157 |
String nameSpace; |
| ... | ... | |
| 192 | 171 |
nameSpace = NAMESPACE_GENERA; |
| 193 | 172 |
cdmClass = TaxonBase.class; |
| 194 | 173 |
idSet = taxonIdSet; |
| 195 |
Map<String, TaxonBase> taxonMap = (Map<String, TaxonBase>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace); |
|
| 174 |
@SuppressWarnings({ "unchecked", "rawtypes" })
|
|
| 175 |
Map<String, TaxonBase> taxonMap = (Map<String, TaxonBase>)getCommonService().getSourcedObjectsByIdInSource(cdmClass, idSet, nameSpace); |
|
| 196 | 176 |
result.put(nameSpace, taxonMap); |
| 197 | 177 |
|
| 198 |
|
|
| 199 | 178 |
//sourceReference |
| 200 | 179 |
Reference sourceReference = getReferenceService().find(PesiTransformer.uuidSourceRefIndexFungorum); |
| 201 | 180 |
Map<String, Reference> referenceMap = new HashMap<String, Reference>(); |
| ... | ... | |
| 217 | 196 |
protected boolean isIgnore(IndexFungorumImportState state){
|
| 218 | 197 |
return ! state.getConfig().isDoTaxa(); |
| 219 | 198 |
} |
| 220 |
|
|
| 221 |
|
|
| 222 |
|
|
| 223 |
|
|
| 224 |
|
|
| 225 | 199 |
} |
Also available in: Unified diff
ref #2826 cleanup IF import