| 114 |
114 |
String authorBasiString = rs.getString("AUTOR_BASI");
|
| 115 |
115 |
|
| 116 |
116 |
if(CdmUtils.isBlank(taxNameString) && CdmUtils.isBlank(ep1String)){
|
| 117 |
|
logger.error("NAMNR: "+id+" No name found!");
|
|
117 |
RedListUtil.logMessage(id, "No name found!", logger);
|
| 118 |
118 |
}
|
| 119 |
119 |
|
| 120 |
120 |
Rank rank = makeRank(state, rangString);
|
| 121 |
121 |
if(rank==null){
|
| 122 |
|
logger.error("NAMNR: "+id+" Rank could not be resolved.");
|
|
122 |
RedListUtil.logMessage(id, "Rank could not be resolved.", logger);
|
| 123 |
123 |
}
|
| 124 |
124 |
BotanicalName name = BotanicalName.NewInstance(rank);
|
| 125 |
125 |
|
| 126 |
126 |
//ep1 should always be present
|
| 127 |
127 |
if(CdmUtils.isBlank(ep1String)){
|
| 128 |
|
logger.error("NAMNR: "+id+" EPI1 is empty!");
|
|
128 |
RedListUtil.logMessage(id, "EPI1 is empty!", logger);
|
| 129 |
129 |
}
|
| 130 |
130 |
name.setGenusOrUninomial(ep1String);
|
| 131 |
131 |
if(!CdmUtils.isBlank(ep2String)){
|
| ... | ... | |
| 144 |
144 |
//TODO: what happens with multiple ex authors??
|
| 145 |
145 |
String[] kombSplit = authorKombString.split(EX);
|
| 146 |
146 |
if(kombSplit.length!=2){
|
| 147 |
|
logger.error("NAMNR: "+id+" Multiple ex combination authors found");
|
|
147 |
RedListUtil.logMessage(id, "Multiple ex combination authors found", logger);
|
| 148 |
148 |
}
|
| 149 |
149 |
for (int i = 0; i < kombSplit.length; i++) {
|
| 150 |
150 |
if(i==0){
|
| ... | ... | |
| 159 |
159 |
}
|
| 160 |
160 |
}
|
| 161 |
161 |
else if(authorKombString.trim().equals(RedListUtil.AUCT)){
|
| 162 |
|
logger.warn("NAMNR: "+id+" AUCT information in AUTOR_KOMB column");
|
|
162 |
RedListUtil.logMessage(id, "AUCT information in AUTOR_KOMB column", logger);
|
| 163 |
163 |
}
|
| 164 |
164 |
else if(!CdmUtils.isBlank(authorKombString)){
|
| 165 |
165 |
TeamOrPersonBase authorKomb = (TeamOrPersonBase) state.getRelatedObject(RedListUtil.AUTHOR_NAMESPACE, authorKombString);
|
| ... | ... | |
| 170 |
170 |
String[] basiSplit = authorBasiString.split(EX);
|
| 171 |
171 |
for (int i = 0; i < basiSplit.length; i++) {
|
| 172 |
172 |
if(basiSplit.length!=2){
|
| 173 |
|
logger.error("NAMNR: "+id+" Multiple ex basionymn authors found");
|
|
173 |
RedListUtil.logMessage(id, "Multiple ex basionymn authors found", logger);
|
| 174 |
174 |
}
|
| 175 |
175 |
if(i==0){
|
| 176 |
176 |
TeamOrPersonBase authorBasi= (TeamOrPersonBase) state.getRelatedObject(RedListUtil.AUTHOR_NAMESPACE, basiSplit[i]);
|
| ... | ... | |
| 220 |
220 |
authorString = "";
|
| 221 |
221 |
}
|
| 222 |
222 |
if(!authorString.equals(authorshipCache)){
|
| 223 |
|
logger.warn("NAMNR: "+id+" Authorship inconsistent! name.authorhshipCache <-> Column AUTOR: "+authorshipCache+" <-> "+authorString);
|
|
223 |
RedListUtil.logMessage(id, "Authorship inconsistent! name.authorhshipCache <-> Column AUTOR: "+authorshipCache+" <-> "+authorString, logger);
|
| 224 |
224 |
}
|
| 225 |
225 |
|
| 226 |
226 |
//id
|
| ... | ... | |
| 238 |
238 |
taxonBase = Synonym.NewInstance(name, null);
|
| 239 |
239 |
}
|
| 240 |
240 |
if(taxonBase==null){
|
| 241 |
|
logger.error("NAMNR: "+id+" Taxon for name "+name+" could not be created.");
|
|
241 |
RedListUtil.logMessage(id, "Taxon for name "+name+" could not be created.", logger);
|
| 242 |
242 |
return;
|
| 243 |
243 |
}
|
| 244 |
244 |
|
Add utils log method