| 9 |
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| 10 |
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package eu.etaxonomy.cdm.io.pesi.erms;
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| 11 |
11 |
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| 12 |
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_ADDITIONAL_SOURCE;
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| 13 |
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_BASIS_OF_RECORD;
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_EMENDATION;
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_NEW_COMBINATION_REFERENCE;
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_ORIGINAL_DESCRIPTION;
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| 17 |
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_REDESCRIPTION;
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_SOURCE_OF_SYNONYMY;
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| 19 |
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import static eu.etaxonomy.cdm.io.pesi.erms.ErmsTransformer.SOURCE_USE_STATUS_SOURCE;
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| 21 |
12 |
import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.HashMap;
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| ... | ... | |
| 36 |
27 |
import eu.etaxonomy.cdm.model.common.CdmBase;
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28 |
import eu.etaxonomy.cdm.model.common.IdentifiableEntity;
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29 |
import eu.etaxonomy.cdm.model.description.CommonTaxonName;
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| 39 |
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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| 40 |
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import eu.etaxonomy.cdm.model.description.DescriptionElementSource;
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import eu.etaxonomy.cdm.model.description.Feature;
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| 42 |
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import eu.etaxonomy.cdm.model.description.TaxonDescription;
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| 43 |
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import eu.etaxonomy.cdm.model.description.TextData;
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| 44 |
30 |
import eu.etaxonomy.cdm.model.name.TaxonName;
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31 |
import eu.etaxonomy.cdm.model.reference.OriginalSourceType;
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| 46 |
32 |
import eu.etaxonomy.cdm.model.reference.Reference;
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| 47 |
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import eu.etaxonomy.cdm.model.taxon.Synonym;
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| 48 |
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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| 49 |
33 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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| 50 |
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| 51 |
35 |
/**
|
| ... | ... | |
| 71 |
55 |
|
| 72 |
56 |
@Override
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| 73 |
57 |
protected String getIdQuery() {
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| 74 |
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String strQuery = " SELECT sourceuse_id, source_id, tu_id " + " " +
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| 75 |
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" FROM tu_sources " +
|
| 76 |
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" ORDER BY sourceuse_id, source_id, tu_id ";
|
|
58 |
String strQuery = " SELECT tu_id, source_id, sourceuse_id " +
|
|
59 |
" FROM tu_sources " +
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|
60 |
" ORDER BY tu_id, source_id, sourceuse_id ";
|
| 77 |
61 |
return strQuery;
|
| 78 |
62 |
}
|
| 79 |
63 |
|
| ... | ... | |
| 82 |
66 |
String strRecordQuery =
|
| 83 |
67 |
" SELECT * " +
|
| 84 |
68 |
" FROM tu_sources INNER JOIN sourceuses ON tu_sources.sourceuse_id = sourceuses.sourceuse_id" +
|
| 85 |
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" WHERE ( tu_sources.sourceuse_id IN (" + ID_LIST_TOKEN + ") AND " +
|
|
69 |
" WHERE ( tu_sources.tu_id IN (" + ID_LIST_TOKEN + ") AND " +
|
| 86 |
70 |
" tu_sources.source_id IN (" + ID_LIST_TOKEN + ") AND " +
|
| 87 |
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" tu_sources.tu_id IN (" + ID_LIST_TOKEN + ") )";
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|
71 |
" tu_sources.sourceuse_id IN (" + ID_LIST_TOKEN + ") )";
|
| 88 |
72 |
return strRecordQuery;
|
| 89 |
73 |
}
|
| 90 |
74 |
|
| ... | ... | |
| 94 |
78 |
boolean success = true ;
|
| 95 |
79 |
Set<CdmBase> objectsToSave = new HashSet<>();
|
| 96 |
80 |
|
| 97 |
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// DbImportMapping<?, ?> mapping = getMapping();
|
| 98 |
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// mapping.initialize(state, cdmTargetClass);
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| 99 |
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|
81 |
int i = 0;
|
| 100 |
82 |
ResultSet rs = partitioner.getResultSet();
|
| 101 |
83 |
try{
|
| 102 |
84 |
while (rs.next()){
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| 103 |
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//success &= mapping.invoke(rs,referencesToSave);
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| 104 |
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|
85 |
i++;
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| 105 |
86 |
//read and normalize values
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| 106 |
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int sourceUseId = rs.getInt("sourceuse_id");
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|
87 |
// int sourceUseId = rs.getInt("sourceuse_id");
|
| 107 |
88 |
int sourceId = rs.getInt("source_id");
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|
89 |
String strSourceUse = rs.getString("sourceuse_name");
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90 |
String strSourceId = String.valueOf(sourceId);
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91 |
int taxonId = rs.getInt("tu_id");
|
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92 |
String strTaxonId = String.valueOf(taxonId);
|
| ... | ... | |
| 117 |
99 |
try {
|
| 118 |
100 |
IdentifiableEntity<?> objectToSave = null;
|
| 119 |
101 |
//invoke methods for each sourceUse type
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| 120 |
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if (sourceUseId == SOURCE_USE_ORIGINAL_DESCRIPTION){
|
| 121 |
|
objectToSave = makeOriginalDescription(partitioner, state, ref, strTaxonId, strPageNr);
|
| 122 |
|
}else if (sourceUseId == SOURCE_USE_BASIS_OF_RECORD){
|
| 123 |
|
objectToSave = makeBasisOfRecord(partitioner, state, ref, strTaxonId, strPageNr);
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| 124 |
|
}else if (sourceUseId == SOURCE_USE_ADDITIONAL_SOURCE){
|
| 125 |
|
objectToSave = makeAdditionalSource(partitioner, state, ref, strTaxonId, strPageNr);
|
| 126 |
|
}else if (sourceUseId == SOURCE_USE_SOURCE_OF_SYNONYMY){
|
| 127 |
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objectToSave = makeSourceOfSynonymy(partitioner, state, ref, strTaxonId, strPageNr);
|
| 128 |
|
}else if (sourceUseId == SOURCE_USE_REDESCRIPTION){
|
| 129 |
|
objectToSave = makeRedescription(partitioner, state, ref, strTaxonId, strPageNr);
|
| 130 |
|
}else if (sourceUseId == SOURCE_USE_NEW_COMBINATION_REFERENCE){
|
| 131 |
|
objectToSave = makeCombinationReference(partitioner, state, ref, strTaxonId, strPageNr);
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| 132 |
|
}else if (sourceUseId == SOURCE_USE_STATUS_SOURCE){
|
| 133 |
|
objectToSave = makeStatusSource(partitioner, state, ref, strTaxonId, strPageNr);
|
| 134 |
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}else if (sourceUseId == SOURCE_USE_EMENDATION){
|
| 135 |
|
objectToSave = makeEmendation(partitioner, state, ref, strTaxonId, strPageNr);
|
| 136 |
|
}
|
|
102 |
String srcUseStr = normalizeSourceUse(strSourceUse);
|
|
103 |
objectToSave = makeSourceUse(state, srcUseStr, ref, strTaxonId, strPageNr, strSourceId);
|
|
104 |
|
| 137 |
105 |
if(objectToSave != null){
|
| 138 |
106 |
objectsToSave.add(objectToSave);
|
| 139 |
107 |
}
|
| ... | ... | |
| 147 |
115 |
return false;
|
| 148 |
116 |
}
|
| 149 |
117 |
|
|
118 |
logger.debug("real partition size: " + i);
|
| 150 |
119 |
partitioner.startDoSave();
|
| 151 |
120 |
getCommonService().save(objectsToSave);
|
| 152 |
121 |
return success;
|
| 153 |
122 |
}
|
| 154 |
123 |
|
| 155 |
|
private TaxonName makeOriginalDescription(ResultSetPartitioner<?> partitioner,
|
| 156 |
|
ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
| 157 |
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TaxonName taxonName = (TaxonName)state.getRelatedObject(ErmsImportBase.NAME_NAMESPACE, strTaxonId);
|
| 158 |
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taxonName.setNomenclaturalReference(ref);
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| 159 |
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taxonName.setNomenclaturalMicroReference(strPageNr);
|
| 160 |
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return taxonName;
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| 161 |
|
}
|
| 162 |
|
|
| 163 |
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private boolean isFirstBasisOfRecord = true;
|
| 164 |
|
|
| 165 |
|
@SuppressWarnings("unused")
|
| 166 |
|
private IdentifiableEntity<?> makeBasisOfRecord(ResultSetPartitioner<?> partitioner,
|
| 167 |
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ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
| 168 |
|
if (isFirstBasisOfRecord){
|
| 169 |
|
logger.warn("Basis of record for all records not yet implemented");
|
| 170 |
|
isFirstBasisOfRecord = false;
|
| 171 |
|
}
|
| 172 |
|
return null;
|
| 173 |
|
}
|
| 174 |
|
|
| 175 |
|
private IdentifiableEntity<?> makeAdditionalSource(ResultSetPartitioner<?> partitioner,
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| 176 |
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ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
| 177 |
|
|
| 178 |
|
Feature citationFeature = Feature.CITATION();
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| 179 |
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DescriptionElementBase element = TextData.NewInstance(citationFeature);
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| 180 |
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DescriptionElementSource source = element.addSource(OriginalSourceType.PrimaryTaxonomicSource, null, null, ref, strPageNr);
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| 181 |
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if (source == null){
|
| 182 |
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logger.warn("Source is null");
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| 183 |
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return null;
|
| 184 |
|
}
|
| 185 |
|
TaxonBase<?> taxonBase = (TaxonBase<?>)state.getRelatedObject(ErmsImportBase.TAXON_NAMESPACE, strTaxonId);
|
| 186 |
|
Taxon taxon;
|
| 187 |
|
|
| 188 |
|
//if taxon base is a synonym, add the description to the accepted taxon
|
| 189 |
|
if (taxonBase.isInstanceOf(Synonym.class)){
|
| 190 |
|
Synonym synonym = CdmBase.deproxy(taxonBase, Synonym.class);
|
| 191 |
|
taxon = synonym.getAcceptedTaxon();
|
| 192 |
|
if (taxon == null){
|
| 193 |
|
String warning = "Synonym "+ strTaxonId + " has no accepted taxon";
|
| 194 |
|
logger.warn(warning);
|
| 195 |
|
return null;
|
| 196 |
|
//throw new IllegalStateException(warning);
|
| 197 |
|
}
|
| 198 |
|
//add synonym name as name used in source
|
| 199 |
|
source.setNameUsedInSource(synonym.getName());
|
| 200 |
|
}else{
|
| 201 |
|
taxon = (Taxon)taxonBase;
|
| 202 |
|
}
|
| 203 |
|
|
| 204 |
|
//get or create description and add the element
|
| 205 |
|
TaxonDescription description;
|
| 206 |
|
if (taxon.getDescriptions().size() > 0){
|
| 207 |
|
description = taxon.getDescriptions().iterator().next();
|
| 208 |
|
}else{
|
| 209 |
|
description = TaxonDescription.NewInstance(taxon);
|
| 210 |
|
}
|
| 211 |
|
description.addElement(element);
|
| 212 |
|
return taxon;
|
| 213 |
|
}
|
| 214 |
|
|
| 215 |
|
private IdentifiableEntity<?> makeSourceOfSynonymy(@SuppressWarnings("unused") ResultSetPartitioner<?> partitioner,
|
| 216 |
|
ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
| 217 |
|
|
| 218 |
|
TaxonBase<?> taxonBase = (TaxonBase<?>)state.getRelatedObject(ErmsImportBase.TAXON_NAMESPACE, strTaxonId);
|
| 219 |
|
if (taxonBase == null){
|
| 220 |
|
String warning = "taxonBase (id = " + strTaxonId + ") could not be found ";
|
| 221 |
|
logger.warn(warning);
|
| 222 |
|
return null;
|
| 223 |
|
}else if (taxonBase.isInstanceOf(Taxon.class)){
|
| 224 |
|
Taxon taxon =CdmBase.deproxy(taxonBase, Taxon.class);
|
| 225 |
|
Feature sourceOfSynonymyFeature = getFeature(state, ErmsTransformer.uuidSourceOfSynonymy, "Source of synonymy", "Source of synonymy", null, null);
|
| 226 |
|
TextData element = TextData.NewInstance(sourceOfSynonymyFeature);
|
| 227 |
|
getTaxonDescription(taxon, false, true).addElement(element);
|
| 228 |
|
element.addPrimaryTaxonomicSource(ref, strPageNr);
|
| 229 |
|
}else if (taxonBase.isInstanceOf(Synonym.class)){
|
| 230 |
|
Synonym synonym =CdmBase.deproxy(taxonBase, Synonym.class);
|
| 231 |
|
if (synonym.getSec()!= null){
|
| 232 |
|
logger.warn("Synonym has sec reference already. Source of synonym can not be set: " + strTaxonId);
|
| 233 |
|
}else{
|
| 234 |
|
synonym.setSec(ref);
|
| 235 |
|
}
|
| 236 |
|
if (synonym.getSecMicroReference()!= null){
|
| 237 |
|
logger.warn("Synonym has sec micro reference already. Source of synonym detail can not be set: " + strTaxonId);
|
| 238 |
|
}else{
|
| 239 |
|
synonym.setSecMicroReference(strPageNr);
|
| 240 |
|
}
|
| 241 |
|
}else{
|
| 242 |
|
throw new RuntimeException("Unsupported taxonbase class");
|
| 243 |
|
}
|
| 244 |
|
|
| 245 |
|
return taxonBase;
|
| 246 |
|
}
|
|
124 |
private String normalizeSourceUse(String sourceUse) {
|
|
125 |
return sourceUse;
|
|
126 |
}
|
| 247 |
127 |
|
| 248 |
|
private boolean isFirstRediscription = true;
|
| 249 |
|
@SuppressWarnings("unused")
|
| 250 |
|
private IdentifiableEntity<?> makeRedescription(ResultSetPartitioner<?> partitioner, ErmsImportState state,
|
| 251 |
|
Reference ref, String strTaxonId, String strPageNr) {
|
| 252 |
|
if (isFirstRediscription){
|
| 253 |
|
logger.warn("Rediscription not yet implemented");
|
| 254 |
|
isFirstRediscription = false;
|
| 255 |
|
}
|
| 256 |
|
return null;
|
| 257 |
|
}
|
|
128 |
private IdentifiableEntity<?> makeSourceUse(ErmsImportState state, String srcUseString,
|
|
129 |
Reference ref, String strTaxonId, String strPageNr, String strSourceId) {
|
| 258 |
130 |
|
| 259 |
|
private IdentifiableEntity<?> makeCombinationReference(ResultSetPartitioner<?> partitioner,
|
| 260 |
|
ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
| 261 |
|
// Kopie von Orig. Comb.
|
| 262 |
|
//TODO ist das wirklich der richtige Name, oder muss ein verknüpfter Name verwendet werden
|
| 263 |
|
TaxonName taxonName = (TaxonName)state.getRelatedObject(ErmsImportBase.NAME_NAMESPACE, strTaxonId);
|
| 264 |
|
taxonName.setNomenclaturalReference(ref);
|
| 265 |
|
taxonName.setNomenclaturalMicroReference(strPageNr);
|
| 266 |
|
return taxonName;
|
| 267 |
|
}
|
|
131 |
TaxonBase<?> taxonBase = (TaxonBase<?>)state.getRelatedObject(ErmsImportBase.TAXON_NAMESPACE, strTaxonId);
|
|
132 |
if (taxonBase == null){
|
|
133 |
logger.warn("TaxonBase " + strTaxonId + " could not be found for source ID " + strSourceId + " and source use " + srcUseString);
|
|
134 |
}else{
|
|
135 |
taxonBase.addSource(OriginalSourceType.Other, ref, strPageNr, srcUseString);
|
|
136 |
}
|
| 268 |
137 |
|
| 269 |
|
private boolean isFirstStatusSource = true;
|
| 270 |
|
@SuppressWarnings("unused")
|
| 271 |
|
private IdentifiableEntity<?> makeStatusSource(ResultSetPartitioner<?> partitioner,
|
| 272 |
|
ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
| 273 |
|
if (isFirstStatusSource){
|
| 274 |
|
logger.warn("StatusSource not yet implemented");
|
| 275 |
|
isFirstStatusSource = false;
|
| 276 |
|
}
|
| 277 |
|
return null;
|
| 278 |
|
}
|
|
138 |
return taxonBase;
|
|
139 |
}
|
| 279 |
140 |
|
| 280 |
|
private boolean isFirstEmendation = true;
|
| 281 |
|
@SuppressWarnings("unused")
|
| 282 |
|
private IdentifiableEntity<?> makeEmendation(ResultSetPartitioner<?> partitioner, ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
| 283 |
|
if (isFirstEmendation){
|
| 284 |
|
logger.warn("Emmendation not yet implemented");
|
| 285 |
|
isFirstEmendation = false;
|
| 286 |
|
}
|
| 287 |
|
return null;
|
| 288 |
|
}
|
|
141 |
// private TaxonName makeOriginalDescription(ResultSetPartitioner<?> partitioner,
|
|
142 |
// ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
|
143 |
// TaxonName taxonName = (TaxonName)state.getRelatedObject(ErmsImportBase.NAME_NAMESPACE, strTaxonId);
|
|
144 |
// taxonName.setNomenclaturalReference(ref);
|
|
145 |
// taxonName.setNomenclaturalMicroReference(strPageNr);
|
|
146 |
// return taxonName;
|
|
147 |
// }
|
|
148 |
|
|
149 |
|
|
150 |
// private IdentifiableEntity<?> makeAdditionalSource(ResultSetPartitioner<?> partitioner,
|
|
151 |
// ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
|
152 |
//
|
|
153 |
// Feature citationFeature = Feature.CITATION();
|
|
154 |
// DescriptionElementBase element = TextData.NewInstance(citationFeature);
|
|
155 |
// DescriptionElementSource source = element.addSource(OriginalSourceType.PrimaryTaxonomicSource, null, null, ref, strPageNr);
|
|
156 |
// if (source == null){
|
|
157 |
// logger.warn("Source is null");
|
|
158 |
// return null;
|
|
159 |
// }
|
|
160 |
// TaxonBase<?> taxonBase = (TaxonBase<?>)state.getRelatedObject(ErmsImportBase.TAXON_NAMESPACE, strTaxonId);
|
|
161 |
// Taxon taxon;
|
|
162 |
//
|
|
163 |
// //if taxon base is a synonym, add the description to the accepted taxon
|
|
164 |
// if (taxonBase.isInstanceOf(Synonym.class)){
|
|
165 |
// Synonym synonym = CdmBase.deproxy(taxonBase, Synonym.class);
|
|
166 |
// taxon = synonym.getAcceptedTaxon();
|
|
167 |
// if (taxon == null){
|
|
168 |
// String warning = "Synonym "+ strTaxonId + " has no accepted taxon";
|
|
169 |
// logger.warn(warning);
|
|
170 |
// return null;
|
|
171 |
// //throw new IllegalStateException(warning);
|
|
172 |
// }
|
|
173 |
// //add synonym name as name used in source
|
|
174 |
// source.setNameUsedInSource(synonym.getName());
|
|
175 |
// }else{
|
|
176 |
// taxon = (Taxon)taxonBase;
|
|
177 |
// }
|
|
178 |
//
|
|
179 |
// //get or create description and add the element
|
|
180 |
// TaxonDescription description;
|
|
181 |
// if (taxon.getDescriptions().size() > 0){
|
|
182 |
// description = taxon.getDescriptions().iterator().next();
|
|
183 |
// }else{
|
|
184 |
// description = TaxonDescription.NewInstance(taxon);
|
|
185 |
// }
|
|
186 |
// description.addElement(element);
|
|
187 |
// return taxon;
|
|
188 |
// }
|
|
189 |
|
|
190 |
// private IdentifiableEntity<?> makeSourceOfSynonymy(@SuppressWarnings("unused") ResultSetPartitioner<?> partitioner,
|
|
191 |
// ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
|
192 |
//
|
|
193 |
// TaxonBase<?> taxonBase = (TaxonBase<?>)state.getRelatedObject(ErmsImportBase.TAXON_NAMESPACE, strTaxonId);
|
|
194 |
// if (taxonBase == null){
|
|
195 |
// String warning = "taxonBase (id = " + strTaxonId + ") could not be found ";
|
|
196 |
// logger.warn(warning);
|
|
197 |
// return null;
|
|
198 |
// }else if (taxonBase.isInstanceOf(Taxon.class)){
|
|
199 |
// Taxon taxon =CdmBase.deproxy(taxonBase, Taxon.class);
|
|
200 |
// Feature sourceOfSynonymyFeature = getFeature(state, ErmsTransformer.uuidSourceOfSynonymy, "Source of synonymy", "Source of synonymy", null, null);
|
|
201 |
// TextData element = TextData.NewInstance(sourceOfSynonymyFeature);
|
|
202 |
// getTaxonDescription(taxon, false, true).addElement(element);
|
|
203 |
// element.addPrimaryTaxonomicSource(ref, strPageNr);
|
|
204 |
// }else if (taxonBase.isInstanceOf(Synonym.class)){
|
|
205 |
// Synonym synonym =CdmBase.deproxy(taxonBase, Synonym.class);
|
|
206 |
// if (synonym.getSec()!= null){
|
|
207 |
// logger.warn("Synonym has sec reference already. Source of synonym can not be set: " + strTaxonId);
|
|
208 |
// }else{
|
|
209 |
// synonym.setSec(ref);
|
|
210 |
// }
|
|
211 |
// if (synonym.getSecMicroReference()!= null){
|
|
212 |
// logger.warn("Synonym has sec micro reference already. Source of synonym detail can not be set: " + strTaxonId);
|
|
213 |
// }else{
|
|
214 |
// synonym.setSecMicroReference(strPageNr);
|
|
215 |
// }
|
|
216 |
// }else{
|
|
217 |
// throw new RuntimeException("Unsupported taxonbase class");
|
|
218 |
// }
|
|
219 |
//
|
|
220 |
// return taxonBase;
|
|
221 |
// }
|
|
222 |
|
|
223 |
// private boolean isFirstRediscription = true;
|
|
224 |
// @SuppressWarnings("unused")
|
|
225 |
// private IdentifiableEntity<?> makeRedescription(ResultSetPartitioner<?> partitioner, ErmsImportState state,
|
|
226 |
// Reference ref, String strTaxonId, String strPageNr) {
|
|
227 |
// if (isFirstRediscription){
|
|
228 |
// logger.warn("Rediscription not yet implemented");
|
|
229 |
// isFirstRediscription = false;
|
|
230 |
// }
|
|
231 |
// return null;
|
|
232 |
// }
|
|
233 |
|
|
234 |
// private IdentifiableEntity<?> makeCombinationReference(ResultSetPartitioner<?> partitioner,
|
|
235 |
// ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
|
236 |
// // Kopie von Orig. Comb.
|
|
237 |
// //TODO ist das wirklich der richtige Name, oder muss ein verknüpfter Name verwendet werden
|
|
238 |
// TaxonName taxonName = (TaxonName)state.getRelatedObject(ErmsImportBase.NAME_NAMESPACE, strTaxonId);
|
|
239 |
// taxonName.setNomenclaturalReference(ref);
|
|
240 |
// taxonName.setNomenclaturalMicroReference(strPageNr);
|
|
241 |
// return taxonName;
|
|
242 |
// }
|
|
243 |
|
|
244 |
// private boolean isFirstStatusSource = true;
|
|
245 |
// @SuppressWarnings("unused")
|
|
246 |
// private IdentifiableEntity<?> makeStatusSource(ResultSetPartitioner<?> partitioner,
|
|
247 |
// ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
|
248 |
// if (isFirstStatusSource){
|
|
249 |
// logger.warn("StatusSource not yet implemented");
|
|
250 |
// isFirstStatusSource = false;
|
|
251 |
// }
|
|
252 |
// return null;
|
|
253 |
// }
|
|
254 |
|
|
255 |
// private boolean isFirstEmendation = true;
|
|
256 |
// @SuppressWarnings("unused")
|
|
257 |
// private IdentifiableEntity<?> makeEmendation(ResultSetPartitioner<?> partitioner, ErmsImportState state, Reference ref, String strTaxonId, String strPageNr) {
|
|
258 |
// if (isFirstEmendation){
|
|
259 |
// logger.warn("Emmendation not yet implemented");
|
|
260 |
// isFirstEmendation = false;
|
|
261 |
// }
|
|
262 |
// return null;
|
|
263 |
// }
|
| 289 |
264 |
|
| 290 |
265 |
@SuppressWarnings("unused")
|
| 291 |
266 |
public CommonTaxonName createObject(ResultSet rs, ErmsImportState state)
|
| ... | ... | |
| 361 |
336 |
|
| 362 |
337 |
@Override
|
| 363 |
338 |
protected boolean isIgnore(ErmsImportState state){
|
| 364 |
|
boolean result;
|
| 365 |
|
// result = state.getConfig().getDoReferences() != IImportConfigurator.DO_REFERENCES.ALL;
|
| 366 |
|
// result |= ! state.getConfig().isDoTaxa();
|
| 367 |
|
result = ! state.getConfig().isDoTaxa();
|
| 368 |
|
return result;
|
|
339 |
return ! state.getConfig().isDoSourceUse();
|
| 369 |
340 |
}
|
| 370 |
341 |
}
|
ref #8508, ref #8509, ref #1444 fix source use for ERMS