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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.plantglossary.kew;
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import java.io.File;
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import java.util.Map;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.csv.in.CsvImportBase;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.OriginalSourceType;
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import eu.etaxonomy.cdm.model.common.TermVocabulary;
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import eu.etaxonomy.cdm.model.description.Feature;
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/**
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*
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* @author pplitzner
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* @since Jan 25, 2019
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*
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*/
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@Component
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public class KewPlantGlossaryImport extends CsvImportBase<KewPlantGlossaryCsvImportConfigurator, KewPlantGlossaryCsvImportState, File>{
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private static final long serialVersionUID = -5600766240192189822L;
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private static Logger logger = Logger.getLogger(KewPlantGlossaryImport.class);
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final String HEADER_LABEL = "term";
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final String HEADER_DEFINITION = "definition";
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final String HEADER_TYPE = "type";
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@Override
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protected void handleSingleLine(KewPlantGlossaryCsvImportState importState) {
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Map<String, String> currentRecord = importState.getCurrentRecord();
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if(CdmUtils.isBlank(currentRecord.get(HEADER_TYPE)) || !currentRecord.get(HEADER_TYPE).equals("1")){
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// only structures (type=1) are imported
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return;
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}
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String termLabel = currentRecord.get(HEADER_LABEL);
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//check if already present
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if(importState.isTermPresent(termLabel, getTermService())){
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return;
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}
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Feature structure = Feature.NewInstance(currentRecord.get(HEADER_DEFINITION), termLabel, null);
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structure.setIdInVocabulary(termLabel);
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TermVocabulary vocabulary = importState.getStructureVoc();
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vocabulary.addTerm(structure);
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IdentifiableSource source = IdentifiableSource.NewInstance(OriginalSourceType.Import, importState.getCitation().getTitle(), null, importState.getCitation(), null);
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source.setIdInSource(termLabel);
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structure.addSource(source);
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getVocabularyService().saveOrUpdate(vocabulary);
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getTermService().saveOrUpdate(structure);
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}
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}
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