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/**
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* Copyright (C) 2015 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.edaphobase;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.agent.TeamOrPersonBase;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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/**
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* @author a.mueller
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* @date 21.12.2015
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*
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*/
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@Component
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public class EdaphobaseAuthorImport extends EdaphobaseImportBase {
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private static final long serialVersionUID = -9138378836474086070L;
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private static final Logger logger = Logger.getLogger(EdaphobaseAuthorImport.class);
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private static final String tableName = "tax_taxon";
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private static final String pluralString = "authors";
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/**
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* @param tableName
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* @param pluralString
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*/
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public EdaphobaseAuthorImport() {
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super(tableName, pluralString);
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}
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@Override
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protected String getIdQuery(EdaphobaseImportState state) {
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//not relevant here
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return null;
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}
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@Override
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protected String getRecordQuery(EdaphobaseImportConfigurator config) {
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//not relevant here
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return null;
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}
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@Override
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protected void doInvoke(EdaphobaseImportState state) {
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makeAuthors(state);
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}
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@Override
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public boolean doPartition(ResultSetPartitioner partitioner, EdaphobaseImportState state) {
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//not relevant here
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return true;
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}
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@Override
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public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs,
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EdaphobaseImportState state) {
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Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>();
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return result;
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}
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/**
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* @param state
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*/
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private void makeAuthors(EdaphobaseImportState state) {
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Map<String, Person> personMap = new HashMap<>();
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Map<String, TeamOrPersonBase<?>> authorMap = new HashMap<>();
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String query = "SELECT DISTINCT t.tax_author_name "
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+ " FROM tax_taxon t"
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+ " WHERE TRIM(t.tax_author_name) <>'' AND t.tax_author_name IS NOT NULL";
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ResultSet rs = state.getConfig().getSource().getResultSet(query);
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try {
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while(rs.next()){
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List<Person> singlePersons = new ArrayList<>();
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String authorStr = rs.getString("tax_author_name");
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String[] splits = authorStr.split("\\s*&\\s*");
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for (String split : splits){
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String[] commaSplits = split.split("\\s*,\\s*");
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for (String commaSplit : commaSplits){
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Person person = personMap.get(commaSplit);
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if (person == null){
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person = Person.NewTitledInstance(commaSplit);
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personMap.put(commaSplit, person);
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}
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singlePersons.add(person);
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}
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}
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if (singlePersons.size() > 1){
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Team team = Team.NewInstance();
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for (Person person: singlePersons){
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team.addTeamMember(person);
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}
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authorMap.put(authorStr, team);
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}else{
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authorMap.put(authorStr, singlePersons.get(0));
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}
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}
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Map<String, UUID> authorUuidMap = new HashMap<>();
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for (String key : authorMap.keySet() ){
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TeamOrPersonBase<?> author = authorMap.get(key);
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authorUuidMap.put(key, author.getUuid());
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}
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state.setAuthorMap(authorUuidMap);
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logger.info("Save " + authorMap.keySet().size() + " authors ...");
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getAgentService().saveOrUpdate((Collection)authorMap.values());
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} catch (SQLException e) {
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e.printStackTrace();
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}
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}
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@Override
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protected boolean doCheck(EdaphobaseImportState state) {
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return false;
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}
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@Override
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protected boolean isIgnore(EdaphobaseImportState state) {
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return ! state.getConfig().isDoTaxa();
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}
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}
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