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// $Id$
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/**
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* Copyright (C) 2016 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.redlist.gefaesspflanzen;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.util.HashMap;
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import java.util.Map;
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import java.util.Map.Entry;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.common.DbImportBase;
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import eu.etaxonomy.cdm.io.common.IPartitionedIO;
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import eu.etaxonomy.cdm.io.common.ImportHelper;
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import eu.etaxonomy.cdm.io.common.ResultSetPartitioner;
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import eu.etaxonomy.cdm.model.agent.AgentBase;
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import eu.etaxonomy.cdm.model.agent.Person;
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import eu.etaxonomy.cdm.model.agent.Team;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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/**
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* @author pplitzner
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* @date Feb 29, 2016
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*
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*/
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@Component
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@SuppressWarnings("serial")
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public class RedListGefaesspflanzenImportAuthor extends DbImportBase<RedListGefaesspflanzenImportState, RedListGefaesspflanzenImportConfigurator> {
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private static final Logger logger = Logger.getLogger(RedListGefaesspflanzenImportAuthor.class);
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private static final String tableName = "Rote Liste Gefäßpflanzen";
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private static final String pluralString = "authors";
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private static final String AUTHOR_KOMB_NAMESPACE = "author_komb";
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private static final String AUTHOR_BASI_NAMESPACE = "author_basi";
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public RedListGefaesspflanzenImportAuthor() {
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super(tableName, pluralString);
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}
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@Override
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protected String getIdQuery(RedListGefaesspflanzenImportState state) {
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return "SELECT NAMNR "
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+ "FROM V_TAXATLAS_D20_EXPORT t "
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+ " ORDER BY NAMNR";
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}
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@Override
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protected String getRecordQuery(RedListGefaesspflanzenImportConfigurator config) {
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String result = " SELECT * "
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+ " FROM V_TAXATLAS_D20_EXPORT t "
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+ " WHERE t.NAMNR IN (@IDSET)";
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result = result.replace("@IDSET", IPartitionedIO.ID_LIST_TOKEN);
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return result;
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}
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@Override
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protected void doInvoke(RedListGefaesspflanzenImportState state) {
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super.doInvoke(state);
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}
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@Override
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public boolean doPartition(ResultSetPartitioner partitioner, RedListGefaesspflanzenImportState state) {
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ResultSet rs = partitioner.getResultSet();
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Map<String, AgentBase> teamsOrPersonToSave = new HashMap<String, AgentBase>();
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try {
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while (rs.next()){
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makeSingleAuthor(state, rs, teamsOrPersonToSave);
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}
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} catch (SQLException e) {
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e.printStackTrace();
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}
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getAgentService().saveOrUpdate(teamsOrPersonToSave.values());
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//add partition to state map
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for (Entry<String, AgentBase> entry: teamsOrPersonToSave.entrySet()) {
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state.getAgentMap().put(entry.getKey(), entry.getValue().getUuid());
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}
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return true;
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}
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private void makeSingleAuthor(RedListGefaesspflanzenImportState state, ResultSet rs, Map<String, AgentBase> teamsOrPersonToSave)
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throws SQLException {
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long id = rs.getLong("NAMNR");
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String authorName = rs.getString("AUTOR");
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String authorBasiName = rs.getString("AUTOR_BASI");
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String authorKombName = rs.getString("AUTOR_KOMB");
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//check null values
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if(CdmUtils.isBlank(authorName) && CdmUtils.isBlank(authorBasiName) && CdmUtils.isBlank(authorKombName)){
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logger.info("NAMNR "+id+": No author found for NAMNR "+id);
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return;
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}
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AgentBase authorKomb = null;
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AgentBase authorBasi = null;
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AgentBase author = null;
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authorKomb = importPerson(state, teamsOrPersonToSave, id, authorKombName, AUTHOR_KOMB_NAMESPACE);
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authorBasi = importPerson(state, teamsOrPersonToSave, id, authorBasiName, AUTHOR_BASI_NAMESPACE);
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//check if missapplied name
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if(authorName.equals("auct.")){
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}
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//check if pro parte synonym
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else if(authorName.equals("p .p.")){
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}
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else if(authorBasi==null && authorKomb==null){
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logger.warn("NAMNR "+id+": Author not atomised in authorKomb and authorBasi. Author: "+authorName);
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importPerson(state, teamsOrPersonToSave, id, authorName, AUTHOR_KOMB_NAMESPACE);
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}
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// //check author column consistency
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// String authorCheckString = "";
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// if(!CdmUtils.isBlank(authorKombName)){
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// authorCheckString = "("+authorBasiName+")"+" "+authorKombName;
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// }
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// else{
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// authorCheckString = authorBasiName;
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// }
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// boolean isAuthorStringCorrect = false;
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// if(authorName.startsWith(authorCheckString)){
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// isAuthorStringCorrect = true;
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// }
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// if(!isAuthorStringCorrect){
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// String errorString = "NAMNR "+id+": Author string not consistent! Is \""+authorName+"\" Should start with \""+authorCheckString+"\"";
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// logger.error(errorString);
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// }
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}
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private AgentBase importPerson(RedListGefaesspflanzenImportState state, Map<String, AgentBase> teamsOrPersonToSave,
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long id, String agentName, String namespace) {
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AgentBase agent = null;
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//check if agent already exists
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AgentBase notYetPersistedAgent = teamsOrPersonToSave.get(agentName);
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UUID existingAgentUuid = state.getAgentMap().get(agentName);
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if(notYetPersistedAgent!=null){
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agent = notYetPersistedAgent;
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}
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else if(existingAgentUuid!=null){
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agent = getAgentService().load(existingAgentUuid);
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}
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else if(!CdmUtils.isBlank(agentName)){
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//check if it is a team
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if(agentName.contains("&")){
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agent = Team.NewInstance();
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String[] split = agentName.split("&");
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for (int i = 0; i < split.length; i++) {
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((Team) agent).addTeamMember(Person.NewTitledInstance(split[i].trim()));
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}
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}
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else{
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agent = Person.NewTitledInstance(agentName);
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}
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teamsOrPersonToSave.put(agentName, agent);
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state.getAgentMap().put(agentName, agent.getUuid());
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ImportHelper.setOriginalSource(agent, state.getTransactionalSourceReference(), id, namespace);
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}
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return agent;
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}
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@Override
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public Map<Object, Map<String, ? extends CdmBase>> getRelatedObjectsForPartition(ResultSet rs,
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RedListGefaesspflanzenImportState state) {
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Map<Object, Map<String, ? extends CdmBase>> result = new HashMap<>();
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return result;
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}
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@Override
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protected boolean doCheck(RedListGefaesspflanzenImportState state) {
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return false;
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}
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@Override
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protected boolean isIgnore(RedListGefaesspflanzenImportState state) {
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return false;
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}
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}
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