Revision e76ff5da
Added by Andreas Müller about 3 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/euromed/IpniSourcesImport.java | ||
|---|---|---|
| 50 | 50 |
private static final String SPECIES = "species"; |
| 51 | 51 |
private static final String INFRA_SPECIES = "infraspecies"; |
| 52 | 52 |
private static final String RANK = "rank"; |
| 53 |
private static final String AUTHORS = "EMauthors"; |
|
| 54 | 53 |
private static final String EM_GEO = "EM-geo"; |
| 55 | 54 |
|
| 56 | 55 |
private Map<String,NamedArea> areaMap; |
| ... | ... | |
| 112 | 111 |
//single areas |
| 113 | 112 |
Map<String, String> record = state.getOriginalRecord(); |
| 114 | 113 |
String allAreaStr = getValue(record, EM_GEO); |
| 114 |
|
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//E+M area |
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NamedArea emArea = getAreaMap().get("EM");
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|
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handleArea(line, taxon, distributions, emArea); |
|
| 118 |
|
|
| 115 | 119 |
if(isBlank(allAreaStr)){
|
| 116 | 120 |
logger.warn(line + "No distribution data exists in IPNI file: " + taxon.getName().getTitleCache()); |
| 117 | 121 |
}else{
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NamedArea emArea = getAreaMap().get("EM");
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handleArea(line, taxon, distributions, emArea); |
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|
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| 121 | 122 |
String[] areaSplit = allAreaStr.split(",");
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| 122 | 123 |
for (String areaStr: areaSplit){
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| 123 | 124 |
NamedArea area = getAreaMap().get(areaStr.trim()); |
| ... | ... | |
| 126 | 127 |
} |
| 127 | 128 |
} |
| 128 | 129 |
|
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/** |
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* @param line |
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* @param taxon |
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* @param distributions |
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* @param area |
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*/ |
|
| 135 | 130 |
private void handleArea(String line, Taxon taxon, Set<Distribution> distributions, NamedArea area) {
|
| 136 | 131 |
Distribution distribution = findDistribution(distributions, area); |
| 137 | 132 |
if (distribution == null){
|
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logger.warn("line + Distribution not found: " + taxon.getName().getTitleCache() + ":" + area.getTitleCache());
|
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logger.warn(line + "Distribution not found: " + taxon.getName().getTitleCache() + ": " + area.getTitleCache());
|
|
| 139 | 134 |
}else{
|
| 140 | 135 |
if (distribution.getSources().isEmpty()){
|
| 141 | 136 |
addNomenclaturalSource(taxon, distribution, line); |
| ... | ... | |
| 147 | 142 |
|
| 148 | 143 |
private String getSourceString(Set<DescriptionElementSource> sources) {
|
| 149 | 144 |
String result = ""; |
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boolean isFirst = true; |
|
| 150 | 146 |
for (DescriptionElementSource source : sources){
|
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if (!isFirst){
|
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result += ";"; |
|
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} |
|
| 151 | 150 |
if (source.getCitation() != null){
|
| 152 | 151 |
result += source.getCitation().getTitleCache(); |
| 153 | 152 |
}else{
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result += "--source has no citation --";
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result += "--source has no citation--"; |
|
| 155 | 154 |
} |
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isFirst = false; |
|
| 156 | 156 |
} |
| 157 | 157 |
return result; |
| 158 | 158 |
} |
Also available in: Unified diff
ref #9145 final changes for IpniSourcesImport