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/**
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* Copyright (C) 2017 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.app.salvador;
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import java.io.IOException;
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import java.net.URI;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.app.common.CdmDestinations;
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import eu.etaxonomy.cdm.app.mexico.MexicoBorhidiActivator;
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import eu.etaxonomy.cdm.database.DbSchemaValidation;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.database.update.CdmUpdater;
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import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
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import eu.etaxonomy.cdm.io.common.ImportResult;
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import eu.etaxonomy.cdm.io.salvador.SalvadorSpecimenImportConfigurator;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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/**
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* @author a.mueller
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* @date 08.07.2017
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*
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*/
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public class SalvadorSpecimenActivator {
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private static final Logger logger = Logger.getLogger(MexicoBorhidiActivator.class);
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//database validation status (create, update, validate ...)
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static DbSchemaValidation hbm2dll = DbSchemaValidation.VALIDATE;
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql_test();
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_salvador_preview();
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// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_salvador_production();
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//check - import
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static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
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protected void doImport(ICdmDataSource cdmDestination){
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URI source = salvadorSpecimen();
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//make Source
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SalvadorSpecimenImportConfigurator config;
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try {
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config = SalvadorSpecimenImportConfigurator.NewInstance(source, cdmDestination);
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} catch (IOException e) {
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String message = "IO Exception when configuring import: " + e.getMessage();
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logger.warn(message);
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return;
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}
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config.setCheck(check);
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config.setDbSchemaValidation(hbm2dll);
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config.setTransactionLineCount(100);
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String fileName = source.toString();
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fileName = fileName.substring(fileName.lastIndexOf("/") + 1 );
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String message = "Start import from ("+ fileName + ") ...";
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System.out.println(message);
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logger.warn(message);
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config.setSourceReference(getSourceReference());
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CdmDefaultImport<SalvadorSpecimenImportConfigurator> myImport
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= new CdmDefaultImport<>();
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ImportResult result = myImport.invoke(config);
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String report = result.createReport().toString();
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System.out.println(report);
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System.out.println("End import from ("+ source.toString() + ")...");
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}
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//SalvadorSpecimen
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public static URI salvadorSpecimen() {
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return URI.create("file:////BGBM-PESIHPC/Salvador/Specimen3.csv");
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}
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private Reference getSourceReference() {
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Reference result = ReferenceFactory.newDatabase();
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result.setTitle("Specimen3.csv");
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return result;
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}
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public void doUpdate(ICdmDataSource cdmDestination){
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CdmUpdater updater = CdmUpdater.NewInstance();
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updater.updateToCurrentVersion(cdmDestination, null);
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}
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/**
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* @param args
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*/
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public static void main(String[] args) {
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SalvadorSpecimenActivator me = new SalvadorSpecimenActivator();
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me.doImport(cdmDestination);
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// me.doUpdate(cdmDestination);
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System.exit(0);
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}
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}
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