Revision e3cf774c
Added by Patrick Plitzner over 7 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/gefaesspflanzen/RedListGefaesspflanzenImportClassification.java | ||
|---|---|---|
| 78 | 78 |
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| 79 | 79 |
@Override |
| 80 | 80 |
protected void doInvoke(RedListGefaesspflanzenImportState state) {
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makeClassification("Gesamtliste", state.getConfig().getClassificationUuid(), "Gesamtliste", null, RedListUtil.gesamtListeReferenceUuid, state);
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makeClassification("Checkliste", RedListUtil.checkListClassificationUuid, "Checkliste", null, RedListUtil.checkListReferenceUuid, state);
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Classification gesamtListe = makeClassification("Gesamtliste", state.getConfig().getClassificationUuid(), "Gesamtliste", null, RedListUtil.gesamtListeReferenceUuid, state);
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Classification checkliste = makeClassification("Checkliste", RedListUtil.checkListClassificationUuid, "Checkliste", null, RedListUtil.checkListReferenceUuid, state);
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| 83 | 83 |
makeClassification("E", RedListUtil.uuidClassificationE, "Ehrendorfer", null, RedListUtil.uuidClassificationReferenceE, state);
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| 84 | 84 |
makeClassification("W", RedListUtil.uuidClassificationW, "Wisskirchen (Standardliste)", 1998, RedListUtil.uuidClassificationReferenceW, state);
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| 85 | 85 |
makeClassification("K", RedListUtil.uuidClassificationK, "Korneck (Rote Liste)", 1996, RedListUtil.uuidClassificationReferenceK, state);
|
| ... | ... | |
| 88 | 88 |
makeClassification("R", RedListUtil.uuidClassificationR, "Rothmaler", 2011, RedListUtil.uuidClassificationReferenceR, state);
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| 89 | 89 |
makeClassification("O", RedListUtil.uuidClassificationO, "Oberdorfer", 2001, RedListUtil.uuidClassificationReferenceO, state);
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| 90 | 90 |
makeClassification("S", RedListUtil.uuidClassificationS, "Schmeil-Fitschen", 2011, RedListUtil.uuidClassificationReferenceS, state);
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importFamilies(state); |
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importFamilies(gesamtListe, checkliste, state);
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super.doInvoke(state); |
| 93 | 93 |
} |
| 94 | 94 |
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| 95 | 95 |
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private void importFamilies(RedListGefaesspflanzenImportState state) {
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Classification gesamtListe = getClassificationService().load(state.getConfig().getClassificationUuid(), Arrays.asList(new String[]{"*, rootNode.childNodes"}));
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Classification checkliste = getClassificationService().load(RedListUtil.checkListClassificationUuid, Arrays.asList(new String[]{"*, rootNode.childNodes"}));
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private void importFamilies(Classification gesamtListe, Classification checkliste, RedListGefaesspflanzenImportState state) {
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for(UUID uuid:state.getFamilyMap().values()){
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Taxon familyGL = HibernateProxyHelper.deproxy(getTaxonService().load(uuid, Arrays.asList(new String[]{"*, taxon"})), Taxon.class);
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Taxon familyGL = HibernateProxyHelper.deproxy(getTaxonService().load(uuid, Arrays.asList(new String[]{"*"})), Taxon.class);
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Taxon familyCL = (Taxon) familyGL.clone(); |
| 102 | 100 |
getTaxonService().saveOrUpdate(familyCL); |
| 103 | 101 |
|
| ... | ... | |
| 173 | 171 |
} |
| 174 | 172 |
Taxon parentGL = (Taxon) state.getRelatedObject(RedListUtil.TAXON_GESAMTLISTE_NAMESPACE, parentId, TaxonBase.class); |
| 175 | 173 |
//add to family if no parent found |
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if(taxonBaseGL.getName().getRank()!=null && taxonBaseGL.getName().getRank().isGenus()){
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if(parentBaseGL!=null){
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RedListUtil.logMessage(id, taxonBaseGL+" is genus but already had a parent when trying to add to family", logger);
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if(parentBaseGL==null){
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if(!taxonBaseGL.isInstanceOf(Taxon.class)){
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RedListUtil.logMessage(id, taxonBaseGL+" has no parent but is not a taxon.", logger);
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| 179 | 177 |
} |
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if(taxonBaseGL.isInstanceOf(Taxon.class)){
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else{
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Taxon family = HibernateProxyHelper.deproxy(getTaxonService().load(state.getFamilyMap().get(familieString)), Taxon.class); |
| 182 | 180 |
gesamtListeClassification.addParentChild(family, HibernateProxyHelper.deproxy(taxonBaseGL, Taxon.class), null, null); |
| 183 | 181 |
} |
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else{
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RedListUtil.logMessage(id, taxonBaseGL+" has no parent but is not a taxon.", logger); |
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} |
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| 187 | 182 |
} |
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//add to higher taxon |
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| 188 | 184 |
else{
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| 189 | 185 |
createParentChildNodes(gesamtListeClassification, id, gueltString, taxZusatzString, taxonBaseGL, parentGL); |
| 190 | 186 |
} |
| ... | ... | |
| 196 | 192 |
RedListUtil.logMessage(id, parentBaseCL+" is no taxon but is a parent of "+taxonBaseCL+" (Checkliste)", logger); |
| 197 | 193 |
} |
| 198 | 194 |
Taxon parentCL = (Taxon) state.getRelatedObject(RedListUtil.TAXON_CHECKLISTE_NAMESPACE, parentId, TaxonBase.class); |
| 199 |
//add to family if no parent found |
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if(parentCL==null){
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} |
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else{
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if(taxonBaseCL!=null){//null check necessary because not all taxa exist in the checklist
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if(taxonBaseCL!=null){//null check necessary because not all taxa exist in the checklist
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//add to family if no parent found |
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if(parentCL==null){
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if(!taxonBaseCL.isInstanceOf(Taxon.class)){
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RedListUtil.logMessage(id, taxonBaseCL+" has no parent but is not a taxon.", logger); |
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} |
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else{
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Taxon family = HibernateProxyHelper.deproxy(getTaxonService().load(state.getFamilyMap().get(familieString)), Taxon.class); |
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checklistClassification.addParentChild(family, HibernateProxyHelper.deproxy(taxonBaseCL, Taxon.class), null, null); |
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} |
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} |
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//add to higher taxon |
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else{
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createParentChildNodes(checklistClassification, id, gueltString, taxZusatzString, taxonBaseCL, parentCL); |
| 206 | 209 |
} |
| 207 | 210 |
} |
| ... | ... | |
| 366 | 369 |
return result; |
| 367 | 370 |
} |
| 368 | 371 |
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private void makeClassification(String classificationName, UUID classificationUuid, String referenceName, Integer yearPublished, UUID referenceUuid, RedListGefaesspflanzenImportState state) {
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private Classification makeClassification(String classificationName, UUID classificationUuid, String referenceName, Integer yearPublished, UUID referenceUuid, RedListGefaesspflanzenImportState state) {
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| 370 | 373 |
Classification classification = Classification.NewInstance(classificationName, Language.DEFAULT()); |
| 371 | 374 |
classification.setUuid(classificationUuid); |
| 372 | 375 |
Reference reference = ReferenceFactory.newGeneric(); |
| ... | ... | |
| 376 | 379 |
if(yearPublished!=null){
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| 377 | 380 |
reference.setDatePublished(TimePeriod.NewInstance(yearPublished)); |
| 378 | 381 |
} |
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getClassificationService().save(classification); |
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return getClassificationService().save(classification);
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| 380 | 383 |
} |
| 381 | 384 |
|
| 382 | 385 |
@Override |
Also available in: Unified diff
#5448 Fix import of families