EDIT

/**

* Copyright (C) 2017 EDIT

* European Distributed Institute of Taxonomy

* http://www.e-taxonomy.eu

*

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

package eu.etaxonomy.cdm.app.caryophyllales;

import java.io.File;

import java.io.FileNotFoundException;

import java.io.FileOutputStream;

import java.io.IOException;

import java.net.URI;

import java.util.Map;

import org.apache.log4j.Logger;

import eu.etaxonomy.cdm.api.application.CdmApplicationController;

import eu.etaxonomy.cdm.app.common.CdmDestinations;

import eu.etaxonomy.cdm.app.util.TestDatabase;

import eu.etaxonomy.cdm.database.DbSchemaValidation;

import eu.etaxonomy.cdm.database.ICdmDataSource;

import eu.etaxonomy.cdm.io.common.CdmDefaultExport;

import eu.etaxonomy.cdm.io.common.ExportResult;

import eu.etaxonomy.cdm.io.common.ExportResultType;

import eu.etaxonomy.cdm.io.outputmodel.OutputModelConfigurator;

/**

 * @author k.luther

 * @date 24.03.2017

 *

 */

public class OutputmodelExportActivator {

private static final ICdmDataSource cdmSource = CdmDestinations.cdm_local_caryophyllales_nepenthaceae();

    // Export:

    private static String exportFileName = "file://C://Users//k.luther//Documents//Caryophyllales//OutputModel";

    private static final Logger logger = Logger.getLogger(OutputmodelExportActivator.class);

    private ExportResult invokeExport(ICdmDataSource sourceParam, URI uri) {

//      String server = "localhost";

//      String database = "EDITimport";

//      String username = "edit";

//      sourceParam = CdmDataSource.NewMySqlInstance(server, database, username, AccountStore.readOrStorePassword(server, database, username, null));

        OutputModelConfigurator outputModelExportConfigurator;

        outputModelExportConfigurator = new OutputModelConfigurator(null);

        CdmDefaultExport<OutputModelConfigurator> outputModelExport =

            new CdmDefaultExport<OutputModelConfigurator>();

        // invoke export

        logger.debug("Invoking OutputModel export");

        ExportResult result = outputModelExport.invoke(outputModelExportConfigurator);

        return result;

    }

    public static String chooseFile(String[] args) {

        if(args == null) {

            return null;

        }

        for (String dest: args){

            if (dest.endsWith(".xml")){

                return args[0];

            }

        }

        return null;

    }

    private CdmApplicationController initDb(ICdmDataSource db) {

        // Init source DB

        CdmApplicationController appCtrInit = TestDatabase.initDb(db, DbSchemaValidation.VALIDATE, false);

        return appCtrInit;

    }

    // Load test data to DB

    private void loadTestData(CdmApplicationController appCtrInit) {

        TestDatabase.loadTestData("", appCtrInit);

    }

    /**

     * @param args

     */

    public static void main(String[] args) {

        OutputmodelExportActivator sc = new OutputmodelExportActivator();

        ICdmDataSource source = CdmDestinations.chooseDestination(args) != null ? CdmDestinations.chooseDestination(args) : cdmSource;

      //  String file = chooseFile(args);

        try {

            sc.initDb(source);  //does this make sense here (it starts the appControler even if it is not needed later

            ExportResult result = sc.invokeExport(source, null);

            if (result.getExportData().getType().equals(ExportResultType.MAP_BYTE_ARRAY)){

                Map<String, byte[]> map = (Map<String, byte[]>)result.getExportData();

                for (String key:map.keySet()){

                    byte[] data =map.get(key);

                    String fileEnding =".csv";

                    File myFile = new File(exportFileName+File.separator + key + fileEnding);

                    FileOutputStream stream = new FileOutputStream(myFile);

                    try {

                        stream.write(data);

                        stream.close();

                    } catch (IOException e) {

                        // TODO Auto-generated catch block

                        e.printStackTrace();

                    }

                }

            }

        } catch (FileNotFoundException e) {

            // TODO Auto-generated catch block

            e.printStackTrace();

        }

    }

}