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// $Id$
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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.globis;
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import java.util.HashSet;
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import java.util.Set;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase;
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import eu.etaxonomy.cdm.io.common.mapping.UndefinedTransformerMethodException;
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import eu.etaxonomy.cdm.model.common.ExtensionType;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.name.NameTypeDesignationStatus;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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/**
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* @author a.mueller
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* @created 01.03.2010
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* @version 1.0
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*/
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public final class GlobisTransformer extends InputTransformerBase {
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private static final Logger logger = Logger.getLogger(GlobisTransformer.class);
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// public static final int SOURCE_USE_ORIGINAL_DESCRIPTION = 1;
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// public static final int SOURCE_USE_BASIS_OF_RECORD = 2;
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// public static final int SOURCE_USE_ADDITIONAL_SOURCE = 3;
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// public static final int SOURCE_USE_SOURCE_OF_SYNONYMY = 4;
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// public static final int SOURCE_USE_REDESCRIPTION = 5;
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// public static final int SOURCE_USE_NEW_COMBINATION_REFERENCE = 6;
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// public static final int SOURCE_USE_STATUS_SOURCE = 7;
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// public static final int SOURCE_USE_EMENDATION = 8;
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//extension types
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public static final UUID uuidEdition = UUID.fromString("c42dfb85-abbe-49b3-8a2b-56cc1b8eb6d0");
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public static final UUID uuidEditor = UUID.fromString("07752659-3018-4880-bf26-41bb396fbf37");
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public static final UUID uuidGeneralKeywords = UUID.fromString("aaa67b2a-c45b-42ed-b4fa-1028ffe41e44");
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public static final UUID uuidGeoKeywords = UUID.fromString("a1afb697-d37b-4a8c-84d8-63f8f01ae10a");
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public static final UUID uuidLibrary = UUID.fromString("71a3e44d-4ed2-44f9-be6a-76fa26a294bd");
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// public static final UUID uuidEditor = UUID.fromString("07752659-3018-4880-bf26-41bb396fbf37");
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// public static final UUID uuidEditor = UUID.fromString("07752659-3018-4880-bf26-41bb396fbf37");
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//language uuids
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public static NomenclaturalCode kingdomId2NomCode(Integer kingdomId){
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switch (kingdomId){
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case 1: return null;
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case 2: return NomenclaturalCode.ICZN; //Animalia
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case 3: return NomenclaturalCode.ICBN; //Plantae
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case 4: return NomenclaturalCode.ICBN; //Fungi
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case 5: return NomenclaturalCode.ICZN ; //Protozoa
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case 6: return NomenclaturalCode.ICNB ; //Bacteria
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case 7: return NomenclaturalCode.ICBN; //Chromista
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case 147415: return NomenclaturalCode.ICNB; //Monera
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default: return null;
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusByKey(java.lang.String)
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*/
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@Override
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public NameTypeDesignationStatus getNameTypeDesignationStatusByKey(String key) throws UndefinedTransformerMethodException {
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if (key == null){
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return null;
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}
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Integer intDesignationId = Integer.valueOf(key);
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switch (intDesignationId){
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case 1: return NameTypeDesignationStatus.ORIGINAL_DESIGNATION();
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case 2: return NameTypeDesignationStatus.SUBSEQUENT_DESIGNATION();
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case 3: return NameTypeDesignationStatus.MONOTYPY();
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default:
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String warning = "Unknown name type designation status id " + key;
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logger.warn(warning);
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return null;
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getNameTypeDesignationStatusUuid(java.lang.String)
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*/
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@Override
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public UUID getNameTypeDesignationStatusUuid(String key) throws UndefinedTransformerMethodException {
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//nott needed
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return super.getNameTypeDesignationStatusUuid(key);
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}
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public Language getLanguageByKey(String ermsAbbrev) throws IllegalArgumentException {
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Set<String> unhandledLanguages = new HashSet<String>();
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if (CdmUtils.isEmpty(ermsAbbrev)){return null;
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}else if (ermsAbbrev.equals("af")){return Language.AFRIKAANS();
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}else if (ermsAbbrev.equals("al")){return Language.ALEUT();
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}else if (ermsAbbrev.equals("ar")){return Language.ARABIC();
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}else if (ermsAbbrev.equals("as")){return Language.ASSAMESE();
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// }else if (ermsAbbrev.equals("au")){return Language.AUNS(); //??
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}else if (ermsAbbrev.equals("az")){return Language.AZERBAIJANI();
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}else if (ermsAbbrev.equals("ba")){return Language.BASQUE();
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}else if (ermsAbbrev.equals("be")){return Language.BELORUSSIAN();
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}else if (ermsAbbrev.equals("bg")){return Language.BULGARIAN();
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}else if (ermsAbbrev.equals("bn")){return Language.BENGALI();
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}else if (ermsAbbrev.equals("br")){return Language.BRETON();
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}else if (ermsAbbrev.equals("bu")){return Language.BURMESE();
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}else if (ermsAbbrev.equals("ca")){return Language.CATALAN_VALENCIAN(); //??? (Catalan)
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}else if (ermsAbbrev.equals("ce")){return Language.CEBUANO();
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}else if (ermsAbbrev.equals("ch")){return Language.CHINESE();
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// }else if (ermsAbbrev.equals("cl")){return Language.CHUKCHI(); // (LOURAVETLANY)(); //iso639-3: ckt //also known as Luoravetlan, Chukot and Chukcha is a Palaeosiberian language spoken by Chukchi people in the easternmost extremity of Siberia, mainly in Chukotka Autonomous Okrug.
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}else if (ermsAbbrev.equals("cr")){return Language.CROATIAN();
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}else if (ermsAbbrev.equals("cs")){return Language.CZECH();
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}else if (ermsAbbrev.equals("da")){return Language.DANISH();
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}else if (ermsAbbrev.equals("de")){return Language.GERMAN();
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// }else if (ermsAbbrev.equals("ec")){return Language.ENGLISH-CANADIAN(); //no iso
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}else if (ermsAbbrev.equals("ee")){return Language.ESTONIAN();
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// }else if (ermsAbbrev.equals("ek")){return Language.EVEN-KAMCHATKA(); //iso639-3: eve Lamut, Ewen, Eben, Orich, Ilqan; Russian: ???�????? ???�?, earlier also ????????? ???�?) is a Tungusic language spoken by the Evens in Siberia
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}else if (ermsAbbrev.equals("en")){return Language.ENGLISH();
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}else if (ermsAbbrev.equals("ep")){return Language.ESPERANTO();
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}else if (ermsAbbrev.equals("es")){return Language.SPANISH_CATALAN();
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// }else if (ermsAbbrev.equals("eu")){return Language.ENGLISH-UNITED STATES(); no iso //ENGLISH();
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// }else if (ermsAbbrev.equals("ev")){return Language.EVENKI(); iso: evn //languages of Tungusic family
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}else if (ermsAbbrev.equals("fa")){return Language.PERSIAN();
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// }else if (ermsAbbrev.equals("fc")){return Language.FRENCH-CANADIAN(); no iso //FRENCH();
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}else if (ermsAbbrev.equals("fi")){return Language.FINNISH();
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}else if (ermsAbbrev.equals("fj")){return Language.FIJIAN();
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}else if (ermsAbbrev.equals("fl")){return Language.DUTCH_FLEMISH();
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}else if (ermsAbbrev.equals("fo")){return Language.FAROESE();
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}else if (ermsAbbrev.equals("fr")){return Language.FRENCH();
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}else if (ermsAbbrev.equals("ga")){return Language.GAELIC_SCOTTISH_GAELIC(); //??
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}else if (ermsAbbrev.equals("ge")){return Language.KALAALLISUT_GREENLANDIC(); // GREENLANDIC
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}else if (ermsAbbrev.equals("gl")){return Language.GALICIAN();
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}else if (ermsAbbrev.equals("gr")){return Language.GREEK_MODERN(); //(Greek)
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// }else if (ermsAbbrev.equals("gu")){return Language.GUARAYO(); //GUARANI() ??
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// }else if (ermsAbbrev.equals("ha")){return Language.HASSANYA(); Hassaniyya Arabic ios 639-3: mey
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}else if (ermsAbbrev.equals("he")){return Language.HEBREW();
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}else if (ermsAbbrev.equals("hi")){return Language.HINDI();
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}else if (ermsAbbrev.equals("hu")){return Language.HUNGARIAN();
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}else if (ermsAbbrev.equals("hw")){return Language.HAWAIIAN();
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}else if (ermsAbbrev.equals("hy")){return Language.ARMENIAN();
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}else if (ermsAbbrev.equals("in")){return Language.INDONESIAN();
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}else if (ermsAbbrev.equals("iq")){return Language.INUPIAQ();
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}else if (ermsAbbrev.equals("ir")){return Language.IRISH();
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}else if (ermsAbbrev.equals("is")){return Language.ICELANDIC();
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}else if (ermsAbbrev.equals("it")){return Language.ITALIAN();
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}else if (ermsAbbrev.equals("ja")){return Language.JAPANESE();
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// }else if (ermsAbbrev.equals("ji")){return Language.JIVARA(); //??
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// }else if (ermsAbbrev.equals("ka")){return Language.KAMCHADAL(); iso 639-3:itl //Itelmen, formerly also known as Kamchadal, is a language belonging to the Chukotko-Kamchatkan family traditionally spoken in the Kamchatka Peninsula.
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}else if (ermsAbbrev.equals("ko")){return Language.KOREAN();
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// }else if (ermsAbbrev.equals("kr")){return Language.KORYAK(); //iso639-3: kpy
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}else if (ermsAbbrev.equals("la")){return Language.LATIN();
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}else if (ermsAbbrev.equals("li")){return Language.LITHUANIAN();
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// }else if (ermsAbbrev.equals("lp")){return Language.LAPP(); //??
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}else if (ermsAbbrev.equals("lv")){return Language.LATVIAN();
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}else if (ermsAbbrev.equals("ma")){return Language.MACEDONIAN();
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// }else if (ermsAbbrev.equals("mh")){return Language.MAHR(); //Marathi ; Mari ??
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// }else if (ermsAbbrev.equals("mk")){return Language.MAKAH (QWIQWIDICCIAT)(); //iso639-3: myh
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}else if (ermsAbbrev.equals("ml")){return Language.MALAY();
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// }else if (ermsAbbrev.equals("ne")){return Language.NENETS(); iso639-3 yrk; iso639-2: mis
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}else if (ermsAbbrev.equals("nl")){return Language.DUTCH_FLEMISH();
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}else if (ermsAbbrev.equals("no")){return Language.NORWEGIAN();
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}else if (ermsAbbrev.equals("np")){return Language.NEPALI();
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// }else if (ermsAbbrev.equals("os")){return Language.OSTYAK(); //Ostyak on its own or in combination, can refer, especially in older literature, to several Siberian peoples and languages:
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// Khanty language (kca; 639-2: fiu); Ket language(ket); Selkup language(sel; 639-2: sel)
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// }else if (ermsAbbrev.equals("pi")){return Language.PIRAYAGUARA(); //??
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}else if (ermsAbbrev.equals("pl")){return Language.POLISH();
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}else if (ermsAbbrev.equals("pt")){return Language.PORTUGUESE();
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}else if (ermsAbbrev.equals("ro")){return Language.ROMANIAN();
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}else if (ermsAbbrev.equals("ru")){return Language.RUSSIAN();
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}else if (ermsAbbrev.equals("sc")){return Language.SCOTS();
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}else if (ermsAbbrev.equals("sd")){return Language.SINDHI();
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// }else if (ermsAbbrev.equals("sh")){return Language.SERBO_CROATIAN(); //hbs
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}else if (ermsAbbrev.equals("si")){return Language.SINHALA_SINHALESE();
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}else if (ermsAbbrev.equals("sk")){return Language.SLOVAK();
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}else if (ermsAbbrev.equals("sn")){return Language.SLOVENIAN();
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}else if (ermsAbbrev.equals("sr")){return Language.SERBIAN();
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}else if (ermsAbbrev.equals("st")){return Language.SRANAN_TONGO();
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}else if (ermsAbbrev.equals("sv")){return Language.SWEDISH();
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}else if (ermsAbbrev.equals("sw")){return Language.SWAHILI();
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}else if (ermsAbbrev.equals("ta")){return Language.TAMIL();
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}else if (ermsAbbrev.equals("te")){return Language.TELUGU();
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}else if (ermsAbbrev.equals("tg")){return Language.TAGALOG();
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}else if (ermsAbbrev.equals("th")){return Language.THAI();
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// }else if (ermsAbbrev.equals("tm")){return Language.TAMUL(); //??
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}else if (ermsAbbrev.equals("tr")){return Language.TURKISH();
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}else if (ermsAbbrev.equals("tu")){return Language.TUPIS();
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}else if (ermsAbbrev.equals("uk")){return Language.UKRAINIAN();
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}else if (ermsAbbrev.equals("ur")){return Language.URDU();
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}else if (ermsAbbrev.equals("vi")){return Language.VIETNAMESE();
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}else if (ermsAbbrev.equals("we")){return Language.WELSH();
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}else if (ermsAbbrev.equals("wo")){return Language.WOLOF();
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}else if (ermsAbbrev.equals("ya")){return Language.YAKUT();
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}else if (ermsAbbrev.equals("yp")){return Language.YUPIKS();
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// }else if (ermsAbbrev.equals("yu")){return Language.YUKAGIR(); 639-2: mis; 639-3 yux (Southern Yukaghir)- ykg(Tundra Yukaghir)
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}else{
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unhandledLanguages.add("au");
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unhandledLanguages.add("cl");
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unhandledLanguages.add("ec");
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unhandledLanguages.add("ek");
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unhandledLanguages.add("eu");
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unhandledLanguages.add("ev");
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unhandledLanguages.add("fc");
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unhandledLanguages.add("gu");
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unhandledLanguages.add("ha");
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unhandledLanguages.add("ji");
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unhandledLanguages.add("ka");
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unhandledLanguages.add("kr");
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unhandledLanguages.add("lp");
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unhandledLanguages.add("mh");
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unhandledLanguages.add("mk");
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unhandledLanguages.add("ne");
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unhandledLanguages.add("os");
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unhandledLanguages.add("pi");
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unhandledLanguages.add("sh");
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unhandledLanguages.add("tm");
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unhandledLanguages.add("sh");
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unhandledLanguages.add("yu");
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if (unhandledLanguages.contains(ermsAbbrev)){
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logger.warn("Unhandled language '" + ermsAbbrev + "' replaced by 'UNDETERMINED'" );
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return Language.UNDETERMINED();
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}
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String warning = "New language abbreviation " + ermsAbbrev;
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logger.warn(warning);
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throw new IllegalArgumentException(warning);
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}
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getLanguageUuid(java.lang.String)
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*/
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@Override
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public UUID getLanguageUuid(String key)
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throws UndefinedTransformerMethodException {
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return super.getLanguageUuid(key);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeByKey(java.lang.String)
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*/
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@Override
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public ExtensionType getExtensionTypeByKey(String key) throws UndefinedTransformerMethodException {
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if (key == null){return null;
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}
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return null;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getExtensionTypeUuid(java.lang.String)
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*/
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@Override
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public UUID getExtensionTypeUuid(String key)
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throws UndefinedTransformerMethodException {
|
|
281
|
if (key == null){return null;
|
|
282
|
// }else if (key.equalsIgnoreCase("recent only")){return uuidRecentOnly;
|
|
283
|
// }else if (key.equalsIgnoreCase("recent + fossil")){return uuidRecentAndFossil;
|
|
284
|
// }else if (key.equalsIgnoreCase("fossil only")){return uuidFossilOnly;
|
|
285
|
}
|
|
286
|
return null;
|
|
287
|
}
|
|
288
|
|
|
289
|
|
|
290
|
|
|
291
|
/* (non-Javadoc)
|
|
292
|
* @see eu.etaxonomy.cdm.io.common.mapping.InputTransformerBase#getFeatureByKey(java.lang.String)
|
|
293
|
*/
|
|
294
|
@Override
|
|
295
|
public Feature getFeatureByKey(String key) throws UndefinedTransformerMethodException {
|
|
296
|
if (CdmUtils.isEmpty(key)){return null;
|
|
297
|
}else if (key.equalsIgnoreCase("Distribution")){return Feature.DISTRIBUTION();
|
|
298
|
}else if (key.equalsIgnoreCase("Ecology")){return Feature.ECOLOGY();
|
|
299
|
}else if (key.equalsIgnoreCase("Diagnosis")){return Feature.DIAGNOSIS();
|
|
300
|
}else if (key.equalsIgnoreCase("Biology")){return Feature.BIOLOGY_ECOLOGY();
|
|
301
|
}else if (key.equalsIgnoreCase("Host")){return Feature.HOSTPLANT();
|
|
302
|
}else{
|
|
303
|
return null;
|
|
304
|
}
|
|
305
|
}
|
|
306
|
|
|
307
|
|
|
308
|
|
|
309
|
|
|
310
|
}
|