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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.app.pesi;
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import java.util.UUID;
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import org.apache.log4j.Logger;
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import eu.etaxonomy.cdm.api.application.CdmApplicationController;
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import eu.etaxonomy.cdm.app.common.CdmDestinations;
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import eu.etaxonomy.cdm.database.DbSchemaValidation;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.DO_REFERENCES;
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import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
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import eu.etaxonomy.cdm.io.common.Source;
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import eu.etaxonomy.cdm.io.faunaEuropaea.FaunaEuropaeaImportConfigurator;
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import eu.etaxonomy.cdm.model.description.Feature;
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import eu.etaxonomy.cdm.model.description.FeatureNode;
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import eu.etaxonomy.cdm.model.description.FeatureTree;
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import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
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/**
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* @author a.babadshanjan
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* @created 12.05.2009
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*/
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public class FaunaEuropaeaActivator {
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private static final Logger logger = Logger.getLogger(FaunaEuropaeaActivator.class);
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static final Source faunaEuropaeaSource = FaunaEuropaeaSources.faunaEu_1_3();
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static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_eunmok();
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static final int limitSave = 2000;
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// static final CHECK check = CHECK.CHECK_AND_IMPORT;
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static final CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
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static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.CREATE;
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// static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.UPDATE;
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// static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;
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static final NomenclaturalCode nomenclaturalCode = NomenclaturalCode.ICZN;
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// ****************** ALL *****************************************
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// Fauna Europaea to CDM import
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static final boolean doAuthors = true;
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static final boolean doTaxa = true;
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static final boolean doBasionyms = true;
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static final boolean doTaxonomicallyIncluded = true;
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static final boolean doMisappliedNames = true;
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static final boolean doHeterotypicSynonyms = true;
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static final DO_REFERENCES doReferences = DO_REFERENCES.ALL;
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static final boolean doDistributions = true;
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static final boolean makeFeatureTree = true;
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// CDM to CDM import
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static final boolean doHeterotypicSynonymsForBasionyms = true;
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// ************************ NONE **************************************** //
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// Fauna Europaea to CDM import
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// static final boolean doAuthors = false;
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// static final boolean doTaxa = false;
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// static final boolean doBasionyms = false;
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// static final boolean doTaxonomicallyIncluded = false;
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// static final boolean doMisappliedNames = false;
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// static final boolean doHeterotypicSynonyms = false;
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// static final DO_REFERENCES doReferences = DO_REFERENCES.NONE;
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// static final boolean doDistributions = false;
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// static final boolean makeFeatureTree = false;
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// // CDM to CDM import
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// static final boolean doHeterotypicSynonymsForBasionyms = false;
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/**
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* @param args
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*/
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public static void main(String[] args) {
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ICdmDataSource destination = cdmDestination;
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System.out.println("Starting import from Fauna Europaea (" + faunaEuropaeaSource.getDatabase() + ") to CDM (" + destination.getDatabase() + ")...");
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// invoke Fauna Europaea to CDM import
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FaunaEuropaeaImportConfigurator fauEuImportConfigurator =
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FaunaEuropaeaImportConfigurator.NewInstance(faunaEuropaeaSource, destination);
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fauEuImportConfigurator.setDbSchemaValidation(dbSchemaValidation);
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fauEuImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
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fauEuImportConfigurator.setCheck(check);
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fauEuImportConfigurator.setDoAuthors(doAuthors);
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fauEuImportConfigurator.setDoTaxa(doTaxa);
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fauEuImportConfigurator.setDoReferences(doReferences);
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fauEuImportConfigurator.setDoOccurrence(doDistributions);
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fauEuImportConfigurator.setDoTaxonomicallyIncluded(doTaxonomicallyIncluded);
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fauEuImportConfigurator.setDoBasionyms(doBasionyms);
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fauEuImportConfigurator.setDoMisappliedNames(doMisappliedNames);
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fauEuImportConfigurator.setDoHeterotypicSynonyms(doHeterotypicSynonyms);
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fauEuImportConfigurator.setDoHeterotypicSynonymsForBasionyms(doHeterotypicSynonymsForBasionyms);
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CdmDefaultImport<FaunaEuropaeaImportConfigurator> fauEuImport =
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new CdmDefaultImport<FaunaEuropaeaImportConfigurator>();
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try {
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fauEuImport.invoke(fauEuImportConfigurator);
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} catch (Exception e) {
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System.out.println("ERROR in Fauna Europaea to CDM import");
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e.printStackTrace();
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}
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// invoke CDM to CDM import
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// System.out.println("Starting import from CDM to CDM (" + destination.getDatabase() + ")...");
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//
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// CdmImportConfigurator cdmImportConfigurator =
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// CdmImportConfigurator.NewInstance(destination, destination);
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//
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// cdmImportConfigurator.setDbSchemaValidation(DbSchemaValidation.VALIDATE);
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// cdmImportConfigurator.setNomenclaturalCode(nomenclaturalCode);
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// cdmImportConfigurator.setCheck(check);
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//
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// cdmImportConfigurator.setDoHeterotypicSynonymsForBasionyms(doHeterotypicSynonymsForBasionyms);
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// cdmImportConfigurator.setDoAuthors(false);
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// cdmImportConfigurator.setDoTaxa(false);
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// cdmImportConfigurator.setDoReferences(DO_REFERENCES.NONE);
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// cdmImportConfigurator.setDoOccurrence(false);
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// cdmImportConfigurator.setLimitSave(limitSave);
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//
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// CdmDefaultImport<CdmImportConfigurator> cdmImport =
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// new CdmDefaultImport<CdmImportConfigurator>();
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// try {
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// cdmImport.invoke(cdmImportConfigurator);
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// } catch (Exception e) {
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// System.out.println("ERROR in CDM to CDM import");
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// e.printStackTrace();
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// }
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//make feature tree
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if (makeFeatureTree == true) {
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FeatureTree featureTree = FeatureTree.NewInstance(UUID.fromString("ff59b9ad-1fb8-4aa4-a8ba-79d62123d0fb"));
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FeatureNode root = featureTree.getRoot();
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CdmApplicationController app = fauEuImport.getCdmAppController();
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Feature citationFeature = (Feature)app.getTermService().find(UUID.fromString("99b2842f-9aa7-42fa-bd5f-7285311e0101"));
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FeatureNode citationNode = FeatureNode.NewInstance(citationFeature);
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root.addChild(citationNode);
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Feature distributionFeature = (Feature)app.getTermService().find(UUID.fromString("9fc9d10c-ba50-49ee-b174-ce83fc3f80c6"));
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FeatureNode distributionNode = FeatureNode.NewInstance(distributionFeature);
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root.addChild(distributionNode);
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app.getFeatureTreeService().saveOrUpdate(featureTree);
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}
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System.out.println("End importing Fauna Europaea data");
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}
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}
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