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/**
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* Copyright (C) 2007 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.berlinModel.in;
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import java.sql.ResultSet;
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import java.sql.SQLException;
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import java.sql.Timestamp;
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import java.util.Map;
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import org.apache.log4j.Logger;
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import org.joda.time.DateTime;
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import eu.etaxonomy.cdm.api.service.pager.Pager;
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import eu.etaxonomy.cdm.common.CdmUtils;
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import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;
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import eu.etaxonomy.cdm.io.common.DbImportBase;
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import eu.etaxonomy.cdm.io.common.ICdmIO;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator.EDITOR;
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import eu.etaxonomy.cdm.io.common.IPartitionedIO;
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import eu.etaxonomy.cdm.io.common.TdwgAreaProvider;
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import eu.etaxonomy.cdm.model.common.AnnotatableEntity;
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import eu.etaxonomy.cdm.model.common.Annotation;
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import eu.etaxonomy.cdm.model.common.AnnotationType;
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import eu.etaxonomy.cdm.model.common.CdmBase;
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import eu.etaxonomy.cdm.model.common.IdentifiableEntity;
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import eu.etaxonomy.cdm.model.common.IdentifiableSource;
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import eu.etaxonomy.cdm.model.common.Language;
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import eu.etaxonomy.cdm.model.common.MarkerType;
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import eu.etaxonomy.cdm.model.common.SourcedEntityBase;
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import eu.etaxonomy.cdm.model.common.User;
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import eu.etaxonomy.cdm.model.description.DescriptionElementBase;
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import eu.etaxonomy.cdm.model.location.Country;
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import eu.etaxonomy.cdm.model.location.NamedArea;
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import eu.etaxonomy.cdm.model.location.NamedAreaType;
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import eu.etaxonomy.cdm.model.reference.ISourceable;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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import eu.etaxonomy.cdm.model.taxon.Taxon;
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import eu.etaxonomy.cdm.model.taxon.TaxonBase;
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import eu.etaxonomy.cdm.model.term.TermType;
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import eu.etaxonomy.cdm.model.term.TermVocabulary;
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import eu.etaxonomy.cdm.persistence.query.MatchMode;
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/**
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* @author a.mueller
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* @since 20.03.2008
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*/
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public abstract class BerlinModelImportBase
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extends DbImportBase<BerlinModelImportState, BerlinModelImportConfigurator>
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implements ICdmIO<BerlinModelImportState>, IPartitionedIO<BerlinModelImportState> {
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private static final long serialVersionUID = -4982506434258587864L;
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private static final Logger logger = Logger.getLogger(BerlinModelImportBase.class);
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public BerlinModelImportBase(String tableName, String pluralString ) {
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super(tableName, pluralString);
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}
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/**
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* @return
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*/
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@Override
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protected String getIdQuery(BerlinModelImportState state){
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String result = " SELECT " + getTableName() + "id FROM " + getTableName();
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return result;
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}
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protected boolean doIdCreatedUpdatedNotes(BerlinModelImportState state, DescriptionElementBase descriptionElement, ResultSet rs, String id, String namespace) throws SQLException{
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boolean success = true;
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//id
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success &= doId(state, descriptionElement, id, namespace);
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//createdUpdateNotes
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success &= doCreatedUpdatedNotes(state, descriptionElement, rs);
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return success;
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}
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protected boolean doIdCreatedUpdatedNotes(BerlinModelImportState state, IdentifiableEntity identifiableEntity, ResultSet rs, long id, String namespace, boolean excludeUpdated, boolean excludeNotes)
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throws SQLException{
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boolean success = true;
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//id
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success &= doId(state, identifiableEntity, id, namespace);
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//createdUpdateNotes
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success &= doCreatedUpdatedNotes(state, identifiableEntity, rs, excludeUpdated, excludeNotes);
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return success;
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}
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protected boolean doIdCreatedUpdatedNotes(BerlinModelImportState state, IdentifiableEntity identifiableEntity, ResultSet rs, long id, String namespace)
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throws SQLException{
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boolean excludeUpdated = false;
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return doIdCreatedUpdatedNotes(state, identifiableEntity, rs, id, namespace, excludeUpdated, false);
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}
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protected boolean doCreatedUpdatedNotes(BerlinModelImportState state, AnnotatableEntity annotatableEntity, ResultSet rs)
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throws SQLException{
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boolean excludeUpdated = false;
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return doCreatedUpdatedNotes(state, annotatableEntity, rs, excludeUpdated, false);
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}
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protected boolean doCreatedUpdatedNotes(BerlinModelImportState state, AnnotatableEntity annotatableEntity,
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ResultSet rs, boolean excludeUpdated, boolean excludeNotes)
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throws SQLException{
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BerlinModelImportConfigurator config = state.getConfig();
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Object createdWhen = rs.getObject("Created_When");
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String createdWho = rs.getString("Created_Who");
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createdWho = normalizeUsername(state, createdWho);
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Object updatedWhen = null;
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String updatedWho = null;
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if (excludeUpdated == false){
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try {
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updatedWhen = rs.getObject("Updated_When");
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updatedWho = rs.getString("Updated_who");
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updatedWho = normalizeUsername(state, updatedWho);
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} catch (SQLException e) {
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//Table "Name" has no updated when/who
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}
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}
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boolean success = true;
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//Created When, Who, Updated When Who
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if (config.getEditor() == null || config.getEditor().equals(EDITOR.NO_EDITORS)){
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//do nothing
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}else if (config.getEditor().equals(EDITOR.EDITOR_AS_ANNOTATION)){
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String createdAnnotationString = "Berlin Model record was created By: " + String.valueOf(createdWho) + " (" + String.valueOf(createdWhen) + ") ";
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if (updatedWhen != null && updatedWho != null){
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createdAnnotationString += " and updated By: " + String.valueOf(updatedWho) + " (" + String.valueOf(updatedWhen) + ")";
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}
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Annotation annotation = Annotation.NewInstance(createdAnnotationString, Language.DEFAULT());
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//TODO make transaction compatible, same as common sec reference
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annotation.setCommentator(config.getCommentator());
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annotation.setAnnotationType(AnnotationType.TECHNICAL());
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annotatableEntity.addAnnotation(annotation);
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}else if (config.getEditor().equals(EDITOR.EDITOR_AS_EDITOR)){
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User creator;
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boolean xmlSourceAdded= addXmlSource(state, annotatableEntity, createdWho, false);
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if (xmlSourceAdded){
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creator = getXmlImporter(state);
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}else{
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creator = getUser(state, createdWho);
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}
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annotatableEntity.setCreatedBy(creator);
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User updator;
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xmlSourceAdded = addXmlSource(state, annotatableEntity, updatedWho, xmlSourceAdded);
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if (xmlSourceAdded){
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updator = getXmlImporter(state);
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}else{
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updator = getUser(state, updatedWho);
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}
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annotatableEntity.setUpdatedBy(updator);
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DateTime created = getDateTime(createdWhen);
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DateTime updated = getDateTime(updatedWhen);
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annotatableEntity.setCreated(created);
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annotatableEntity.setUpdated(updated);
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}else {
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logger.warn("Editor type not yet implemented: " + config.getEditor());
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}
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//notes
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if (! excludeNotes){
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String notes = rs.getString("notes");
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doNotes(annotatableEntity, notes);
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}
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return success;
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}
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/**
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* @param state
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* @return
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*/
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private User getXmlImporter(BerlinModelImportState state) {
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return getUser(state, "import to BM");
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}
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/**
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* @param state
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* @param annotatableEntity
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* @param xmlSourceAdded
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* @return
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*/
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private boolean addXmlSource(BerlinModelImportState state, AnnotatableEntity annotatableEntity, String username, boolean existsAlready) {
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if (!state.getConfig().isEuroMed() || !isXmlImport(username)){
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return false;
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}
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if (isXmlImport(username) && existsAlready){
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return true;
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}
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Reference ref = getXmlRef(state, username);
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if (annotatableEntity.isInstanceOf(SourcedEntityBase.class)){
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SourcedEntityBase<?> sourcedEntity = CdmBase.deproxy(annotatableEntity, SourcedEntityBase.class);
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sourcedEntity.addImportSource(null, null, ref, null);
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}else if (annotatableEntity.isInstanceOf(DescriptionElementBase.class)){
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DescriptionElementBase descriptionElement = CdmBase.deproxy(annotatableEntity, DescriptionElementBase.class);
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descriptionElement.addImportSource(null, null, ref, null);
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}else{
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return false;
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}
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return true;
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}
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/**
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* @param state
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* @param username
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* @return
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*/
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private Reference getXmlRef(BerlinModelImportState state, String username) {
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String namespace = "IMPORT USER";
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Reference ref = state.getRelatedObject(namespace, username, Reference.class);
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if (ref == null){
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if (state.getXmlImportRefUuid(username)!= null){
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ref = getReferenceService().find(state.getXmlImportRefUuid(username));
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}
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if (ref == null){
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Pager<Reference> pager = getReferenceService().findByTitle(Reference.class, username, MatchMode.EXACT, null, null, null, null, null);
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if (pager.getCount()>0){
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ref = pager.getRecords().get(0);
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if (pager.getCount()>1){
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logger.warn("More then 1 reference found for " + username);
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}
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}
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}
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if (ref == null){
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ref = ReferenceFactory.newDatabase();
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ref.setTitleCache(username, true);
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ref.setTitle(username);
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getReferenceService().save(ref);
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}
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state.addRelatedObject(namespace, username, ref);
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state.putXmlImportRefUuid(username, ref.getUuid());
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}
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return ref;
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}
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/**
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* @param username
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* @return
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*/
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private boolean isXmlImport(String username) {
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if (username == null){
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return false;
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}
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return username.matches(".*\\.xml")
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|| username.equals("J.Li: import from pandora")
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|| username.equals("J.Li imported from pandora")
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||username.equals("Import from Kew Checklist 2010")
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||username.equals("Import from ILDIS 2010");
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}
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private DateTime getDateTime(Object timeString){
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if (timeString == null){
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return null;
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}
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DateTime dateTime = null;
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if (timeString instanceof Timestamp){
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Timestamp timestamp = (Timestamp)timeString;
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dateTime = new DateTime(timestamp);
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}else{
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logger.warn("time ("+timeString+") is not a timestamp. Datetime set to current date. ");
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dateTime = new DateTime();
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}
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return dateTime;
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}
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/**
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* @param state
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* @param newTaxonId
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* @param taxonMap
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* @param factId
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* @return
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*/
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protected Taxon getTaxon(BerlinModelImportState state, int taxonId, Map<String, TaxonBase> taxonMap, int factId) {
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TaxonBase<?> taxonBase = taxonMap.get(String.valueOf(taxonId));
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//TODO for testing
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// if (taxonBase == null && ! state.getConfig().isDoTaxa()){
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// taxonBase = Taxon.NewInstance(TaxonNameFactory.NewBotanicalInstance(Rank.SPECIES()), null);
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// }
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Taxon taxon;
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if ( taxonBase instanceof Taxon ) {
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taxon = (Taxon) taxonBase;
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} else if (taxonBase != null) {
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logger.warn("TaxonBase (" + taxonId + ") for Fact(Specimen) with factId " + factId + " was not of type Taxon but: " + taxonBase.getClass().getSimpleName());
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return null;
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} else {
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logger.warn("TaxonBase (" + taxonId + ") for Fact(Specimen) with factId " + factId + " is null.");
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return null;
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}
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return taxon;
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}
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/**
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* Searches first in the detail maps then in the ref maps for a reference.
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* Returns the reference as soon as it finds it in one of the map, according
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* to the order of the map.
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* If nomRefDetailFk is <code>null</code> no search on detail maps is performed.
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* If one of the maps is <code>null</code> no search on the according map is
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* performed. <BR>
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* You may define the order of search by the order you pass the maps but
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* make sure to always pass the detail maps first.
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* @param firstDetailMap
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* @param secondDetailMap
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* @param firstRefMap
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* @param secondRefMap
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* @param nomRefDetailFk
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* @param nomRefFk
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* @return
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*/
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protected Reference getReferenceFromMaps(
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Map<String, Reference> detailMap,
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Map<String, Reference> refMap,
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String nomRefDetailFk,
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String nomRefFk) {
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Reference ref = null;
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if (detailMap != null){
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ref = detailMap.get(nomRefDetailFk);
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}
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if (ref == null){
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ref = refMap.get(nomRefFk);
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}
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return ref;
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}
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/**
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* Searches for a reference in the first detail map. If it does not exist it
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* searches in the second detail map. Returns null if it does not exist in any map.
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* A map may be <code>null</code> to avoid search on this map.
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* @param secondDetailMap
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* @param firstDetailMap
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* @param nomRefDetailFk
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* @return
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*/
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private Reference getReferenceDetailFromMaps(Map<String, Reference> firstDetailMap, Map<String, Reference> secondDetailMap, String nomRefDetailFk) {
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Reference result = null;
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if (nomRefDetailFk != null){
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//get ref
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if (firstDetailMap != null){
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result = firstDetailMap.get(nomRefDetailFk);
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}
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if (result == null && secondDetailMap != null){
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result = secondDetailMap.get(nomRefDetailFk);
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}
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}
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363
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return result;
|
|
364
|
}
|
|
365
|
|
|
366
|
protected NamedArea getOtherAreas(BerlinModelImportState state, String emCodeString, String tdwgCodeString) {
|
|
367
|
String em = CdmUtils.Nz(emCodeString).trim();
|
|
368
|
String tdwg = CdmUtils.Nz(tdwgCodeString).trim();
|
|
369
|
//Cichorieae + E+M
|
|
370
|
if ("EM".equals(em)){
|
|
371
|
return getNamedArea(state, BerlinModelTransformer.euroMedUuid, "Euro+Med", "Euro+Med area", "EM", null, null);
|
|
372
|
}else if("Rf".equals(em)){
|
|
373
|
return Country.RUSSIANFEDERATION();
|
|
374
|
|
|
375
|
}else if("KRY-OO;UKR-UK".equals(tdwg)){
|
|
376
|
return Country.UKRAINE();
|
|
377
|
|
|
378
|
}else if("TCS-AZ;TCS-NA".equals(tdwg)){
|
|
379
|
return Country.AZERBAIJANREPUBLICOF();
|
|
380
|
}else if("TCS-AB;TCS-AD;TCS-GR".equals(tdwg)){
|
|
381
|
return Country.GEORGIA();
|
|
382
|
|
|
383
|
}else if("Cc".equals(em)){
|
|
384
|
return getNamedArea(state, BerlinModelTransformer.uuidCaucasia, "Caucasia (Ab + Ar + Gg + Rf(CS))", "Euro+Med area 'Caucasia (Ab + Ar + Gg + Rf(CS))'", "Cc", null, null);
|
|
385
|
}
|
|
386
|
|
|
387
|
//E+M
|
|
388
|
else if("EUR".equals(em)){
|
|
389
|
return TdwgAreaProvider.getAreaByTdwgAbbreviation("1");
|
|
390
|
}else if("14".equals(em)){
|
|
391
|
return TdwgAreaProvider.getAreaByTdwgAbbreviation("14");
|
|
392
|
}else if("21".equals(em)){
|
|
393
|
return TdwgAreaProvider.getAreaByTdwgAbbreviation("21"); // Macaronesia
|
|
394
|
}else if("33".equals(em)){
|
|
395
|
return TdwgAreaProvider.getAreaByTdwgAbbreviation("33");
|
|
396
|
|
|
397
|
}else if("SM".equals(em)){
|
|
398
|
return getNamedArea(state, BerlinModelTransformer.uuidSerbiaMontenegro, "Serbia & Montenegro", "Euro+Med area 'Serbia & Montenegro'", "SM", NamedAreaType.ADMINISTRATION_AREA(), null);
|
|
399
|
}else if("Sr".equals(em)){
|
|
400
|
return getNamedArea(state, BerlinModelTransformer.uuidSerbia, "Serbia", "Euro+Med area 'Serbia' (including Kosovo and Vojvodina)", "Sr", NamedAreaType.ADMINISTRATION_AREA(), null);
|
|
401
|
|
|
402
|
|
|
403
|
//see #2769
|
|
404
|
}else if("Rs".equals(em)){
|
|
405
|
return getNamedArea(state, BerlinModelTransformer.uuidUssr, "Former USSR", "Euro+Med area 'Former USSR'", "Rs", NamedAreaType.ADMINISTRATION_AREA(), null);
|
|
406
|
}else if("Rs(N)".equals(em)){
|
|
407
|
return getNamedArea(state, BerlinModelTransformer.uuidRussiaNorthern, "Russia Northern", "Euro+Med area 'Russia Northern'", "Rs(N)", null, null);
|
|
408
|
}else if("Rs(B)".equals(em)){
|
|
409
|
return getNamedArea(state, BerlinModelTransformer.uuidRussiaBaltic, "Russia Baltic", "Euro+Med area 'Russia Baltic'", "Rs(B)", null, null);
|
|
410
|
}else if("Rs(C)".equals(em)){
|
|
411
|
return getNamedArea(state, BerlinModelTransformer.uuidRussiaCentral, "Russia Central", "Euro+Med area 'Russia Central'", "Rs(C)", null, null);
|
|
412
|
}else if("Rs(W)".equals(em)){
|
|
413
|
return getNamedArea(state, BerlinModelTransformer.uuidRussiaSouthWest, "Russia Southwest", "Euro+Med area 'Russia Southwest'", "Rs(W)", null, null);
|
|
414
|
}else if("Rs(E)".equals(em)){
|
|
415
|
return getNamedArea(state, BerlinModelTransformer.uuidRussiaSouthEast, "Russia Southeast", "Euro+Med area 'Russia Southeast'", "Rs(E)", null, null);
|
|
416
|
|
|
417
|
//see #2770
|
|
418
|
}else if("AE".equals(em)){
|
|
419
|
return getNamedArea(state, BerlinModelTransformer.uuidEastAegeanIslands, "East Aegean Islands", "Euro+Med area 'East Aegean Islands'", "AE", null, null);
|
|
420
|
}else if("AE(T)".equals(em)){
|
|
421
|
return getNamedArea(state, BerlinModelTransformer.uuidTurkishEastAegeanIslands, "Turkish East Aegean Islands", "Euro+Med area 'Turkish East Aegean Islands'", "AE(T)", null, null);
|
|
422
|
}else if("Tu".equals(em)){
|
|
423
|
return getNamedArea(state, BerlinModelTransformer.uuidTurkey, "Turkey", "Euro+Med area 'Turkey' (without AE(T))", "Tu", null, null);
|
|
424
|
|
|
425
|
//TODO Azores, Canary Is.
|
|
426
|
}else if("Md(D)".equals(em)){
|
|
427
|
return getNamedArea(state, BerlinModelTransformer.uuidDesertas, "Desertas", "Euro+Med area 'Desertas'", "Md(D)", null, null);
|
|
428
|
}else if("Md(M)".equals(em)){
|
|
429
|
return getNamedArea(state, BerlinModelTransformer.uuidMadeira, "Madeira", "Euro+Med area 'Madeira'", "Md(M)", null, null);
|
|
430
|
}else if("Md(P)".equals(em)){
|
|
431
|
return getNamedArea(state, BerlinModelTransformer.uuidPortoSanto, "Porto Santo", "Euro+Med area 'Porto Santo'", "Md(P)", null, null);
|
|
432
|
//Azores
|
|
433
|
}else if("Az(L)".equals(em)){
|
|
434
|
return getNamedArea(state, BerlinModelTransformer.uuidFlores, "Flores", "Euro+Med area 'Flores'", "Az(L)", null, null);
|
|
435
|
}else if("Az(C)".equals(em)){
|
|
436
|
return getNamedArea(state, BerlinModelTransformer.uuidCorvo, "Corvo", "Euro+Med area 'Corvo'", "Az(C)", null, null);
|
|
437
|
}else if("Az(F)".equals(em)){
|
|
438
|
return getNamedArea(state, BerlinModelTransformer.uuidFaial, "Faial", "Euro+Med area 'Faial'", "Az(F)", null, null);
|
|
439
|
}else if("Az(G)".equals(em)){
|
|
440
|
return getNamedArea(state, BerlinModelTransformer.uuidGraciosa, "Graciosa", "Euro+Med area 'Graciosa'", "Az(G)", null, null);
|
|
441
|
}else if("Az(J)".equals(em)){
|
|
442
|
return getNamedArea(state, BerlinModelTransformer.uuidSaoJorge, "S\u00E3o Jorge", "Euro+Med area 'S\u00E3o Jorge'", "Az(J)", null, null);
|
|
443
|
}else if("Az(M)".equals(em)){
|
|
444
|
return getNamedArea(state, BerlinModelTransformer.uuidSaoMiguel, "S\u00E3o Miguel", "Euro+Med area 'S\u00E3o Miguel'", "Az(M)", null, null);
|
|
445
|
}else if("Az(P)".equals(em)){
|
|
446
|
return getNamedArea(state, BerlinModelTransformer.uuidPico, "Pico", "Euro+Med area 'Pico'", "Az(P)", null, null);
|
|
447
|
}else if("Az(S)".equals(em)){
|
|
448
|
return getNamedArea(state, BerlinModelTransformer.uuidSantaMaria, "Santa Maria", "Euro+Med area 'Santa Maria'", "Az(S)", null, null);
|
|
449
|
}else if("Az(T)".equals(em)){
|
|
450
|
return getNamedArea(state, BerlinModelTransformer.uuidTerceira, "Terceira", "Euro+Med area 'Terceira'", "Az(T)", null, null);
|
|
451
|
//Canary Islands
|
|
452
|
}else if("Ca(C)".equals(em)){
|
|
453
|
return getNamedArea(state, BerlinModelTransformer.uuidGranCanaria, "Gran Canaria", "Euro+Med area 'Gran Canaria'", "Ca(C)", null, null);
|
|
454
|
}else if("Ca(F)".equals(em)){
|
|
455
|
return getNamedArea(state, BerlinModelTransformer.uuidFuerteventura, "Fuerteventura with Lobos", "Euro+Med area 'Fuerteventura with Lobos'", "Ca(F)", null, null);
|
|
456
|
}else if("Ca(G)".equals(em)){
|
|
457
|
return getNamedArea(state, BerlinModelTransformer.uuidGomera, "Gomera", "Euro+Med area 'Gomera'", "Ca(G)", null, null);
|
|
458
|
}else if("Ca(H)".equals(em)){
|
|
459
|
return getNamedArea(state, BerlinModelTransformer.uuidHierro, "Hierro", "Euro+Med area 'Hierro'", "Ca(H)", null, null);
|
|
460
|
}else if("Ca(L)".equals(em)){
|
|
461
|
return getNamedArea(state, BerlinModelTransformer.uuidLanzaroteWithGraciosa, "Lanzarote with Graciosa", "Euro+Med area 'Lanzarote with Graciosa'", "Ca(L)", null, null);
|
|
462
|
}else if("Ca(P)".equals(em)){
|
|
463
|
return getNamedArea(state, BerlinModelTransformer.uuidLaPalma, "La Palma", "Euro+Med area 'La Palma'", "Ca(P)", null, null);
|
|
464
|
}else if("Ca(T)".equals(em)){
|
|
465
|
return getNamedArea(state, BerlinModelTransformer.uuidTenerife, "Tenerife", "Euro+Med area 'Tenerife'", "Ca(T)", null, null);
|
|
466
|
//Baleares
|
|
467
|
}else if("Bl(I)".equals(em)){
|
|
468
|
return getNamedArea(state, BerlinModelTransformer.uuidIbizaWithFormentera, "Ibiza with Formentera", "Euro+Med area 'Ibiza with Formentera'", "Bl(I)", null, null);
|
|
469
|
}else if("Bl(M)".equals(em)){
|
|
470
|
return getNamedArea(state, BerlinModelTransformer.uuidTerceira, "Mallorca", "Euro+Med area 'Mallorca'", "Bl(M)", null, null);
|
|
471
|
}else if("Bl(N)".equals(em)){
|
|
472
|
return getNamedArea(state, BerlinModelTransformer.uuidTerceira, "Menorca", "Euro+Med area 'Menorca'", "Bl(N)", null, null);
|
|
473
|
}
|
|
474
|
|
|
475
|
logger.warn("Area(em: '" + em + "', tdwg: '" + tdwg +"') could not be found");
|
|
476
|
|
|
477
|
return null;
|
|
478
|
}
|
|
479
|
|
|
480
|
/**
|
|
481
|
* @return
|
|
482
|
*/
|
|
483
|
protected TermVocabulary<MarkerType> getEuroMedMarkerTypeVoc() {
|
|
484
|
TermVocabulary<MarkerType> markerTypeVoc = getVocabulary(TermType.MarkerType, BerlinModelTransformer.uuidVocEMMarkerType,
|
|
485
|
"Euro+Med marker type vocabulary", "E+M marker types", null, null, false, MarkerType.COMPLETE());
|
|
486
|
return markerTypeVoc;
|
|
487
|
}
|
|
488
|
|
|
489
|
|
|
490
|
/**
|
|
491
|
* @param sourceReference
|
|
492
|
* @return
|
|
493
|
*/
|
|
494
|
protected Reference getSourceReference(Reference sourceReference) {
|
|
495
|
Reference persistentSourceReference = getReferenceService().find(sourceReference.getUuid()); //just to be sure
|
|
496
|
if (persistentSourceReference != null){
|
|
497
|
sourceReference = persistentSourceReference;
|
|
498
|
}
|
|
499
|
return sourceReference;
|
|
500
|
}
|
|
501
|
|
|
502
|
protected static <T extends IdentifiableSource> boolean importSourceExists(ISourceable<T> sourceable, String idInSource,
|
|
503
|
String namespace, Reference ref) {
|
|
504
|
for (T source : sourceable.getSources()){
|
|
505
|
if (CdmUtils.nullSafeEqual(namespace, source.getIdNamespace()) &&
|
|
506
|
CdmUtils.nullSafeEqual(idInSource, source.getIdInSource()) &&
|
|
507
|
CdmUtils.nullSafeEqual(ref, source.getCitation())){
|
|
508
|
return true;
|
|
509
|
}
|
|
510
|
}
|
|
511
|
return false;
|
|
512
|
}
|
|
513
|
|
|
514
|
/**
|
|
515
|
* @param state
|
|
516
|
* @param username
|
|
517
|
* @return
|
|
518
|
*/
|
|
519
|
protected String normalizeUsername(BerlinModelImportState state, String username) {
|
|
520
|
if (username == null){
|
|
521
|
return null;
|
|
522
|
}else{
|
|
523
|
username = username.trim();
|
|
524
|
if (state.getConfig().isEuroMed()){
|
|
525
|
if (username.matches("[A-Za-z]+[7-9][0-9]")){
|
|
526
|
username = username.substring(0, username.length()-2);
|
|
527
|
}else if(username.matches("(mariam[1-4]|palermo|palma|paltar)")){
|
|
528
|
username = "mariam";
|
|
529
|
}
|
|
530
|
if(username.matches("kapet")){
|
|
531
|
username = "kpet";
|
|
532
|
}
|
|
533
|
}
|
|
534
|
return username;
|
|
535
|
}
|
|
536
|
}
|
|
537
|
|
|
538
|
}
|