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Revision d934688e

Added by Andreas Müller over 2 years ago

cleanup

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app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/CaryoActivator.java
6 6 
* The contents of this file are subject to the Mozilla Public License Version 1.1
7 7 
* See LICENSE.TXT at the top of this package for the full license terms.
8 8 
*/
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package eu.etaxonomy.cdm.app.caryophyllales;


  		




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import java.util.UUID;


  		




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 * @since 16.10.2012


  		




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 */


  		




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public class CaryoActivator extends SourceBase{


  		




  
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	private static final Logger logger = Logger.getLogger(CaryoActivator.class);


  		




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	//database validation status (create, update, validate ...)


  		




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	static final DbSchemaValidation hbm2dll = DbSchemaValidation.CREATE;


  		




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	static final Source source = caryo_len61();


  		




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	static final ICdmDataSource cdmDestination = CdmDestinations.localH2();


  		




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//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_local_mysql();


  		




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//	static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_postgres_CdmTest();


  		




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	static final String classificationName = "Caryophyllales";


  		




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	static final boolean doTaxa = true;


  		




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	static final boolean doDeduplicate = true;


  		




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	private void doImport(ICdmDataSource cdmDestination){


  		




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		//make Source


  		




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		config.setSourceReferenceTitle("NCU - Caryophyllales, v0.4");


  		




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		config.setClassificationName(classificationName);


  		




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		CdmDefaultImport<CaryoImportConfigurator> myImport = new CdmDefaultImport<CaryoImportConfigurator>();


  		




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		CdmDefaultImport<CaryoImportConfigurator> myImport = new CdmDefaultImport<>();


  		




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		//...


  		




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		if (true){


  		




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			System.out.println("End import from ("+ source.toString() + ")...");


  		




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		}


  		




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		//deduplicate


  		




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		if (doDeduplicate){


  		




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			ICdmRepository app = myImport.getCdmAppController();


  		




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			count = app.getReferenceService().deduplicate(Reference.class, null, null);


  		




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			logger.warn("Deduplicated " + count + " references.");


  		




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		}


  		




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	}


  		




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	private Reference getSourceReference(String string) {


  		




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		return result;


  		




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	}


  		




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	public static Source caryo_len61(){


  		




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		//	Cyryophyllales source


  		




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		String dbms = Source.SQL_SERVER_2008;


  		




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		return  makeSource(dbms, strServer, strDB, port, userName, null);


  		




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	}


  		




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	/**


  		




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	 * @param args


  		




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	 */


  		




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	public static void main(String[] args) {


  		




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		CaryoActivator me = new CaryoActivator();


  		




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		me.doImport(cdmDestination);


  		




  
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	    System.exit(0);


  		




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	}


  		




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}


  		




  
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}


  		












  

    
      app-import/src/main/java/eu/etaxonomy/cdm/app/caryophyllales/TaxonExcelCaryophyllalesActivator.java
    
  





  
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/**


  		




  
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* Copyright (C) 2007 EDIT


  		




  
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* European Distributed Institute of Taxonomy


  		




  
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* http://www.e-taxonomy.eu


  		




  
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*


  		




  
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* The contents of this file are subject to the Mozilla Public License Version 1.1


  		




  
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* See LICENSE.TXT at the top of this package for the full license terms.


  		




  
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*/


  		




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package eu.etaxonomy.cdm.app.caryophyllales;


  		




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import java.io.File;


  		




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import eu.etaxonomy.cdm.io.common.CdmDefaultExport;


  		




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import eu.etaxonomy.cdm.io.csv.caryophyllales.out.CsvNameExportConfigurator;


  		




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/**


  		




  
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 * @author k.luther


  		




  
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 * @since 03.07.2015


  		




  
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 */


  		




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public class TaxonExcelCaryophyllalesActivator {


  		




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    @SuppressWarnings("unused")


  		




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    	csvExport.invoke(csvNameExportConfigurator);


  		




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    }


  		




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}


  		




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}


  		












  

    
      app-import/src/main/java/eu/etaxonomy/cdm/app/wp6/cichorieae/CichorieaeFirstImageImportActivator.java
    
  





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/**


  		




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* Copyright (C) 2007 EDIT


  		




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* European Distributed Institute of Taxonomy 


  		




  
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* European Distributed Institute of Taxonomy


  		




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* http://www.e-taxonomy.eu


  		




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* 


  		




  
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*


  		




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* The contents of this file are subject to the Mozilla Public License Version 1.1


  		




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* See LICENSE.TXT at the top of this package for the full license terms.


  		




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*/


  		




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package eu.etaxonomy.cdm.app.wp6.cichorieae;


  		




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import eu.etaxonomy.cdm.common.URI;


  		




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import java.net.URISyntaxException;


  		




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import java.util.UUID;


  		




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import eu.etaxonomy.cdm.app.common.CdmDestinations;


  		




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import eu.etaxonomy.cdm.app.images.ImageImportConfigurator;


  		




  
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import eu.etaxonomy.cdm.common.URI;


  		




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import eu.etaxonomy.cdm.database.ICdmDataSource;


  		




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import eu.etaxonomy.cdm.io.common.CdmDefaultImport;


  		




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import eu.etaxonomy.cdm.io.common.IImportConfigurator;


  		




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 * @since 18.11.2008


  		




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 * @version 1.0


  		




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 */


  		




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public class CichorieaeImageActivator  {


  		




  
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public class CichorieaeFirstImageImportActivator  {


  		




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	@SuppressWarnings("unused")


  		




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	private static final Logger logger = Logger.getLogger(CichorieaeImageActivator.class);


  		




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	private static final Logger logger = Logger.getLogger(CichorieaeFirstImageImportActivator.class);


  		




  
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	//	private static final File sourceFile = new File("src/main/resources/images/images_cich.xls");


  		




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	private static final ICdmDataSource cdmDestination = CdmDestinations.localH2Cichorieae();


  		




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//	private static final ICdmDataSource cdmDestination = CdmDestinations.cdm_import_cichorieae();


  		




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	static final UUID secUuid = UUID.fromString("6924c75d-e0d0-4a6d-afb7-3dd8c71195ca");


  		




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//	static final UUID treeUuid = UUID.fromString("00db28a7-50e1-4abc-86ec-b2a8ce870de9");


  		




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	static final UUID treeUuid = UUID.fromString("534e190f-3339-49ba-95d9-fa27d5493e3e");


  		




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	public static void main (String[] cowabunga){


  		




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		ICdmDataSource destination = CdmDestinations.chooseDestination(cowabunga) != null ? CdmDestinations.chooseDestination(cowabunga) : cdmDestination;


  		




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		URI imageFolderCichorieae;


  		




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		try {


  		




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			imageFolderCichorieae = new URI (CichorieaeActivator.imageFolderString);


  		




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					imageFolderCichorieae, destination, CichorieaeImageImport.class);


  		




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			imageConfigurator.setSecUuid(secUuid);


  		




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			imageConfigurator.setClassificationUuid(treeUuid);


  		




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			CdmDefaultImport<IImportConfigurator> importer = new CdmDefaultImport<IImportConfigurator>();


  		




  
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			CdmDefaultImport<IImportConfigurator> importer = new CdmDefaultImport<>();


  		




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			importer.invoke(imageConfigurator);


  		




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		} catch (URISyntaxException e) {


  		




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			e.printStackTrace();


  		












  

    
      app-import/src/main/java/eu/etaxonomy/cdm/io/mexico/MexicoBorhidiExcelImport.java
    
  





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@Component


  		




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public class MexicoBorhidiExcelImport<CONFIG extends MexicoBorhidiImportConfigurator>


  		




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        extends SimpleExcelTaxonImport<CONFIG>{


  		




  
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    private static final Logger logger = Logger.getLogger(MexicoBorhidiExcelImport.class);


  		




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    private static final long serialVersionUID = -3607776356577606657L;


  		




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      app-import/src/main/java/eu/etaxonomy/cdm/io/mexico/SimpleExcelTaxonImport.java
    
  





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    protected static INonViralNameParser<?> nameParser = NonViralNameParserImpl.NewInstance();


  		




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    @Override


  		




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    protected void analyzeRecord(Map<String, String> record, SimpleExcelTaxonImportState<CONFIG> state) {


  		




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        //override only if needed


  		












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