|
1
|
/**
|
|
2
|
* Copyright (C) 2015 EDIT
|
|
3
|
* European Distributed Institute of Taxonomy
|
|
4
|
* http://www.e-taxonomy.eu
|
|
5
|
*
|
|
6
|
* The contents of this file are subject to the Mozilla Public License Version 1.1
|
|
7
|
* See LICENSE.TXT at the top of this package for the full license terms.
|
|
8
|
*/
|
|
9
|
package eu.etaxonomy.cdm.app.euromed;
|
|
10
|
|
|
11
|
import java.util.UUID;
|
|
12
|
|
|
13
|
import org.apache.logging.log4j.LogManager;
|
|
14
|
import org.apache.logging.log4j.Logger;
|
|
15
|
|
|
16
|
import eu.etaxonomy.cdm.app.common.CdmDestinations;
|
|
17
|
import eu.etaxonomy.cdm.common.URI;
|
|
18
|
import eu.etaxonomy.cdm.database.DbSchemaValidation;
|
|
19
|
import eu.etaxonomy.cdm.database.ICdmDataSource;
|
|
20
|
import eu.etaxonomy.cdm.io.berlinModel.BerlinModelTransformer;
|
|
21
|
import eu.etaxonomy.cdm.io.common.CdmDefaultImport;
|
|
22
|
import eu.etaxonomy.cdm.io.common.IImportConfigurator.CHECK;
|
|
23
|
import eu.etaxonomy.cdm.io.common.ImportResult;
|
|
24
|
import eu.etaxonomy.cdm.io.fact.commonname.in.CommonNameExcelImportConfigurator;
|
|
25
|
import eu.etaxonomy.cdm.model.common.Language;
|
|
26
|
import eu.etaxonomy.cdm.model.name.NomenclaturalCode;
|
|
27
|
|
|
28
|
/**
|
|
29
|
* @author a.mueller
|
|
30
|
* @since 24.01.2023
|
|
31
|
*/
|
|
32
|
public class EuroMedFinnishCommonNameImportActivator {
|
|
33
|
|
|
34
|
@SuppressWarnings("unused")
|
|
35
|
private static final Logger logger = LogManager.getLogger();
|
|
36
|
|
|
37
|
//database validation status (create, update, validate ...)
|
|
38
|
static DbSchemaValidation dbSchemaValidation = DbSchemaValidation.VALIDATE;
|
|
39
|
|
|
40
|
static final ICdmDataSource cdmDestination = CdmDestinations.cdm_local_test_mysql();
|
|
41
|
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_test_euroMed();
|
|
42
|
// static final ICdmDataSource cdmDestination = CdmDestinations.cdm_production_euromed();
|
|
43
|
|
|
44
|
static final UUID sourceRefUuid = UUID.fromString("c239bd59-63b8-442a-b097-4a7a7869b933");
|
|
45
|
|
|
46
|
static final UUID finnishUuid = Language.uuidFinnish;
|
|
47
|
static final UUID finland = BerlinModelTransformer.uuidEMAreaCommonNameFinland;
|
|
48
|
static final UUID swedishUuid = Language.uuidSwedish;
|
|
49
|
static final UUID swedenAndFinland = BerlinModelTransformer.uuidEMAreaCommonNameSwedenAndFinland;
|
|
50
|
|
|
51
|
static final boolean isSwedish = false;
|
|
52
|
|
|
53
|
static final UUID areaUuid = isSwedish ? swedenAndFinland : finland;
|
|
54
|
static final UUID languageUuid = isSwedish ? swedishUuid : finnishUuid;
|
|
55
|
static final String commonNameCol = isSwedish ? "" : "FINNISH_NAME";
|
|
56
|
|
|
57
|
|
|
58
|
//check - import
|
|
59
|
static CHECK check = CHECK.IMPORT_WITHOUT_CHECK;
|
|
60
|
|
|
61
|
private void doImport(ICdmDataSource cdmDestination){
|
|
62
|
|
|
63
|
URI source = getEM_FinnishCN_Uri();
|
|
64
|
CommonNameExcelImportConfigurator config;
|
|
65
|
// try {
|
|
66
|
config = CommonNameExcelImportConfigurator.NewInstance(source, cdmDestination);
|
|
67
|
|
|
68
|
config.setDbSchemaValidation(dbSchemaValidation);
|
|
69
|
config.setCheck(check);
|
|
70
|
config.setNomenclaturalCode(NomenclaturalCode.ICNAFP);
|
|
71
|
config.setSourceRefUuid(sourceRefUuid);
|
|
72
|
// config.setSourceReference(getSourceReference());
|
|
73
|
config.setDefaultLanguageUuid(languageUuid);
|
|
74
|
config.setDefaultAreaUuid(areaUuid);
|
|
75
|
config.setCommonNameColumnLabel(commonNameCol);
|
|
76
|
config.setWorksheetName("ACCEPTED");
|
|
77
|
|
|
78
|
CdmDefaultImport<CommonNameExcelImportConfigurator> myImport = new CdmDefaultImport<>();
|
|
79
|
ImportResult result = myImport.invoke(config);
|
|
80
|
System.out.println(result.createReport());
|
|
81
|
// } catch (IOException e) {
|
|
82
|
// System.out.println("URI not 'found': " + source);
|
|
83
|
// }
|
|
84
|
}
|
|
85
|
|
|
86
|
private URI getEM_FinnishCN_Uri(){
|
|
87
|
String fileName = "EM_finnish_commonNames_fi_2019.xlsx";
|
|
88
|
|
|
89
|
URI uri = URI.create("file:////BGBM-PESIHPC/EuroMed/" + fileName);
|
|
90
|
if (!uri.toFile().exists()) {
|
|
91
|
System.exit(-1);
|
|
92
|
}
|
|
93
|
return uri;
|
|
94
|
}
|
|
95
|
|
|
96
|
// private Reference getSourceReference(){
|
|
97
|
// Reference result = ReferenceFactory.newDatabase();
|
|
98
|
// result.setTitle("Euro+Med IPNI import");
|
|
99
|
// result.setUuid(UUID.fromString("937f3a38-dbb4-4888-9ea3-2f52d47f7953"));
|
|
100
|
// result.setDatePublished(VerbatimTimePeriod.NewVerbatimNowInstance());
|
|
101
|
// return result;
|
|
102
|
// }
|
|
103
|
|
|
104
|
public static void main(String[] args) {
|
|
105
|
EuroMedFinnishCommonNameImportActivator me = new EuroMedFinnishCommonNameImportActivator();
|
|
106
|
me.doImport(cdmDestination);
|
|
107
|
System.exit(0);
|
|
108
|
}
|
|
109
|
}
|