Revision c911c118
Added by Andreas Müller almost 4 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/berlinModel/in/BerlinModelTaxonRelationImport.java | ||
|---|---|---|
| 56 | 56 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 57 | 57 |
import eu.etaxonomy.cdm.model.taxon.TaxonBase; |
| 58 | 58 |
import eu.etaxonomy.cdm.model.taxon.TaxonNode; |
| 59 |
import eu.etaxonomy.cdm.model.taxon.TaxonNodeStatus; |
|
| 59 | 60 |
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship; |
| 60 | 61 |
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType; |
| 61 | 62 |
import eu.etaxonomy.cdm.strategy.exceptions.UnknownCdmTypeException; |
| ... | ... | |
| 757 | 758 |
relQualifierFk == TAX_REL_IS_PARTIAL_HETEROTYPIC_SYNONYM_OF |
| 758 | 759 |
){
|
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return true; |
| 760 |
|
|
| 761 | 761 |
}else{
|
| 762 | 762 |
return false; |
| 763 | 763 |
} |
| ... | ... | |
| 767 | 767 |
int treeRefFk, Taxon child, Taxon parent, Reference citation, String microCitation, Boolean provisional){
|
| 768 | 768 |
Classification tree = getClassificationTree(state, classificationMap, treeRefFk); |
| 769 | 769 |
TaxonNode result = tree.addParentChild(parent, child, citation, microCitation); |
| 770 |
result.setUnplaced(provisional); |
|
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if (provisional){
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|
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result.setStatus(TaxonNodeStatus.DOUBTFUL); |
|
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} |
|
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return result; |
| 772 | 774 |
} |
| 773 | 775 |
|
| app-import/src/main/java/eu/etaxonomy/cdm/io/cuba/CubaExcelImport.java | ||
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| 61 | 61 |
import eu.etaxonomy.cdm.model.taxon.SynonymType; |
| 62 | 62 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 63 | 63 |
import eu.etaxonomy.cdm.model.taxon.TaxonNode; |
| 64 |
import eu.etaxonomy.cdm.model.taxon.TaxonNodeStatus; |
|
| 64 | 65 |
import eu.etaxonomy.cdm.model.taxon.TaxonRelationship; |
| 65 | 66 |
import eu.etaxonomy.cdm.model.taxon.TaxonRelationshipType; |
| 66 | 67 |
import eu.etaxonomy.cdm.strategy.homotypicgroup.BasionymRelationCreator; |
| ... | ... | |
| 1009 | 1010 |
getTaxonNodeService().saveOrUpdate(newNode); |
| 1010 | 1011 |
if(isAbsent){
|
| 1011 | 1012 |
botanicalName.setTitleCache(taxonStrOrig, true); |
| 1012 |
newNode.setExcluded(true);
|
|
| 1013 |
newNode.setStatus(TaxonNodeStatus.EXCLUDED);
|
|
| 1013 | 1014 |
} |
| 1014 | 1015 |
|
| 1015 | 1016 |
return taxon; |
| app-import/src/main/java/eu/etaxonomy/cdm/io/greece/FloraHellenicaCommentsImport.java | ||
|---|---|---|
| 102 | 102 |
|
| 103 | 103 |
TaxonNode taxonNode = acceptedTaxon.getTaxonNodes().iterator().next(); |
| 104 | 104 |
if(taxonNode.isExcluded()){
|
| 105 |
taxonNode.putExcludedNote(Language.ENGLISH(), commentStr);
|
|
| 105 |
taxonNode.putStatusNote(Language.ENGLISH(), commentStr);
|
|
| 106 | 106 |
} |
| 107 | 107 |
return ; |
| 108 | 108 |
} |
| app-import/src/main/java/eu/etaxonomy/cdm/io/greece/FloraHellenicaExcludedTaxonImport.java | ||
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| 31 | 31 |
import eu.etaxonomy.cdm.model.taxon.ITaxonTreeNode; |
| 32 | 32 |
import eu.etaxonomy.cdm.model.taxon.Taxon; |
| 33 | 33 |
import eu.etaxonomy.cdm.model.taxon.TaxonNode; |
| 34 |
import eu.etaxonomy.cdm.model.taxon.TaxonNodeStatus; |
|
| 34 | 35 |
import eu.etaxonomy.cdm.strategy.parser.NonViralNameParserImpl; |
| 35 | 36 |
|
| 36 | 37 |
/** |
| ... | ... | |
| 91 | 92 |
} |
| 92 | 93 |
} |
| 93 | 94 |
|
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|
|
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/** |
|
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* @param state |
|
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* @param line |
|
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* @param record |
|
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* @param noStr |
|
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* @return |
|
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*/ |
|
| 102 | 95 |
private TaxonNode makeTaxon(SimpleExcelTaxonImportState<CONFIG> state, String line, |
| 103 | 96 |
Map<String, String> record, |
| 104 | 97 |
String noStr) {
|
| ... | ... | |
| 133 | 126 |
} |
| 134 | 127 |
taxon.addImportSource(noStr, getWorksheetName(state.getConfig()), getSourceCitation(state), null); |
| 135 | 128 |
TaxonNode excludedNode = familyTaxonNode.addChildTaxon(taxon, getSecReference(state), null); |
| 136 |
excludedNode.setExcluded(true);
|
|
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excludedNode.setStatus(TaxonNodeStatus.EXCLUDED);
|
|
| 137 | 130 |
getTaxonNodeService().saveOrUpdate(excludedNode); |
| 138 | 131 |
return excludedNode; |
| 139 | 132 |
} |
| 140 | 133 |
|
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|
|
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|
|
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/** |
|
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* @return |
|
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*/ |
|
| 146 | 134 |
private Reference makeHayek1929() {
|
| 147 | 135 |
Reference ref = ReferenceFactory.newGeneric(); |
| 148 | 136 |
Person hayek = Person.NewInstance(); |
| ... | ... | |
| 152 | 140 |
return ref; |
| 153 | 141 |
} |
| 154 | 142 |
|
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|
|
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/** |
|
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* @param record |
|
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* @param state |
|
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* @return |
|
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*/ |
|
| 161 | 143 |
private TaxonNode getFamilyTaxon(Map<String, String> record, |
| 162 | 144 |
SimpleExcelTaxonImportState<CONFIG> state) {
|
| 163 | 145 |
|
| ... | ... | |
| 188 | 170 |
return familyNode; |
| 189 | 171 |
} |
| 190 | 172 |
|
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|
|
| 192 | 173 |
private ITaxonTreeNode getExcludedFamilyTaxon( |
| 193 | 174 |
SimpleExcelTaxonImportState<CONFIG> state) {
|
| 194 | 175 |
|
| ... | ... | |
| 202 | 183 |
name.setTitleCache("Excluded", true);
|
| 203 | 184 |
Taxon taxon = Taxon.NewInstance(name, getSecReference(state)); |
| 204 | 185 |
excludedFamilyNode = plantae.addChildTaxon(taxon, getSourceCitation(state), null); |
| 205 |
excludedFamilyNode.setExcluded(true);
|
|
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excludedFamilyNode.setStatus(TaxonNodeStatus.EXCLUDED);
|
|
| 206 | 187 |
getTaxonNodeService().saveOrUpdate(excludedFamilyNode); |
| 207 | 188 |
return excludedFamilyNode; |
| 208 | 189 |
} |
Also available in: Unified diff
ref #9005 adapt imports to new TaxonNode.status and status notes