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/**
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* Copyright (C) 2009 EDIT
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* European Distributed Institute of Taxonomy
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* http://www.e-taxonomy.eu
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*
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* The contents of this file are subject to the Mozilla Public License Version 1.1
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* See LICENSE.TXT at the top of this package for the full license terms.
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*/
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package eu.etaxonomy.cdm.io.redlist.bfnXml;
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/**
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* @author a.oppermann
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* @date 03.07.2013
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*
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*/
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import java.io.InputStream;
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import java.lang.reflect.Method;
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import java.net.MalformedURLException;
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import java.net.URI;
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import java.net.URL;
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import org.apache.log4j.Logger;
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import org.jdom.Element;
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import org.jdom.Namespace;
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import org.springframework.stereotype.Component;
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import eu.etaxonomy.cdm.common.XmlHelp;
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import eu.etaxonomy.cdm.database.ICdmDataSource;
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import eu.etaxonomy.cdm.io.common.IImportConfigurator;
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import eu.etaxonomy.cdm.io.common.ImportConfiguratorBase;
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import eu.etaxonomy.cdm.io.common.mapping.IInputTransformer;
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import eu.etaxonomy.cdm.io.tcsxml.DefaultTcsXmlPlaceholders;
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import eu.etaxonomy.cdm.io.tcsxml.ITcsXmlPlaceholderClass;
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import eu.etaxonomy.cdm.model.reference.Reference;
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import eu.etaxonomy.cdm.model.reference.ReferenceFactory;
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@Component
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public class BfnXmlImportConfigurator extends ImportConfiguratorBase<BfnXmlImportState, URI> implements IImportConfigurator {
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private static final Logger logger = Logger.getLogger(BfnXmlImportConfigurator.class);
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//TODO
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private static IInputTransformer defaultTransformer = null;
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private boolean doMetaData = true;
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private boolean doSpecimen = true;
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private boolean doInformationImport = true;
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private boolean fillSecondList = false;
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public boolean isFillSecondList() {
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return fillSecondList;
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}
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public void setFillSecondList(boolean fillSecondList) {
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this.fillSecondList = fillSecondList;
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}
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// //references
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private DO_REFERENCES doReferences = DO_REFERENCES.ALL;
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// //names
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private boolean doTaxonNames = true;
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private boolean doRelNames = true;
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// //taxa
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private boolean doTaxa = true;
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private boolean doRelTaxa = true;
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private Method functionMetaDataDetailed = null;
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private ITcsXmlPlaceholderClass placeholderClass;
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// rdfNamespace
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Namespace bfnXmlNamespace;
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protected static Namespace nsTcsXml = Namespace.getNamespace("http://www.tdwg.org/schemas/tcs/1.01");
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// @Autowired
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// TcsXmlMetaDataImport tcsXmlMetaDataImport;
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// @Autowired
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// TcsXmlSpecimensImport tcsXmlSpecimensIO;
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// @Autowired
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// TcsXmlPublicationsImport tcsXmlPublicationsIO;
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// @Autowired
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// BfnXmlTaxonNameImport tcsXmlTaxonNameIO;
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// @Autowired
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// TcsXmlTaxonNameRelationsImport tcsXmlTaxonNameRelationsIO;
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// @Autowired
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// BfnXmlTaxonImport tcsXmlTaxonIO;
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// @Autowired
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// TcsXmlTaxonRelationsImport tcsXmlTaxonRelationsIO;
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@SuppressWarnings("unchecked")
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protected void makeIoClassList(){
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// ioBeans = new String[]{
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// "tcsXmlMetaDataImport"
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// , "tcsXmlSpecimensIO"
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// , "tcsXmlPublicationsIO"
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// , "tcsXmlTaxonNameIO"
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// , "tcsXmlTaxonNameRelationsIO"
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// , "tcsXmlTaxonIO"
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// , "tcsXmlTaxonRelationsIO"
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// };
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ioClassList = new Class[]{
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BfnXmlImportMetaData.class,
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BfnXmlImportFeature.class,
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BfnXmlImportTaxonName.class
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};
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};
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public static BfnXmlImportConfigurator NewInstance(URI uri,
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ICdmDataSource destination){
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return new BfnXmlImportConfigurator(uri, destination);
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}
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/**
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* @param berlinModelSource
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* @param sourceReference
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* @param destination
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*/
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private BfnXmlImportConfigurator() {
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super(defaultTransformer);
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// setSource(url);
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// setDestination(destination);
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}
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/**
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* @param berlinModelSource
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* @param sourceReference
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* @param destination
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*/
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private BfnXmlImportConfigurator(URI uri, ICdmDataSource destination) {
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super(defaultTransformer);
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setSource(uri);
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setDestination(destination);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getNewState()
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*/
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public BfnXmlImportState getNewState() {
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return new BfnXmlImportState(this);
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSource()
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*/
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public URI getSource() {
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return (URI)super.getSource();
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}
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/**
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* @param file
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*/
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public void setSource(URI uri) {
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super.setSource(uri);
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}
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/**
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* @return
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*/
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public Element getSourceRoot(){
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URI source = getSource();
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try {
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URL url;
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url = source.toURL();
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Object o = url.getContent();
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InputStream is = (InputStream)o;
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Element root = XmlHelp.getRoot(is);
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makeNamespaces(root);
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return root;
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} catch (MalformedURLException e) {
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e.printStackTrace();
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}catch (Exception e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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return null;
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}
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private boolean makeNamespaces(Element root){
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bfnXmlNamespace = root.getNamespace();
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if (bfnXmlNamespace == null
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/**|| tcNamespace == null
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* || tnNamespace == null
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* || commonNamespace == null
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* || geoNamespace == null
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* || publicationNamespace == null*/){
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logger.warn("At least one Namespace is NULL");
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}
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return true;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.ImportConfiguratorBase#getSourceReference()
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*/
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@Override
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public Reference getSourceReference() {
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//TODO
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if (this.sourceReference == null){
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logger.warn("getSource Reference not yet fully implemented");
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sourceReference = ReferenceFactory.newDatabase();
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sourceReference.setTitleCache("", true);
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}
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return sourceReference;
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}
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/* (non-Javadoc)
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* @see eu.etaxonomy.cdm.io.common.IImportConfigurator#getSourceNameString()
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*/
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public String getSourceNameString() {
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if (this.getSource() == null){
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return null;
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}else{
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return this.getSource().toString();
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}
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}
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public Namespace getBfnXmlNamespace() {
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return bfnXmlNamespace;
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}
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public void setBfnXmlNamespace(Namespace bfnXmlNamespace) {
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this.bfnXmlNamespace = bfnXmlNamespace;
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}
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/**
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* @param funMetaDataDetailed the funMetaDataDetailed to set
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*/
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public void setFunctionMetaDataDetailed(Method functionMetaDataDetailed) {
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this.functionMetaDataDetailed = functionMetaDataDetailed;
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}
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public DO_REFERENCES getDoReferences() {
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return doReferences;
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}
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public void setDoReferences(DO_REFERENCES doReferences) {
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this.doReferences = doReferences;
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}
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public boolean isDoTaxonNames() {
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return doTaxonNames;
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}
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public void setDoTaxonNames(boolean doTaxonNames) {
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this.doTaxonNames = doTaxonNames;
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}
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public boolean isDoTaxa() {
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return doTaxa;
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}
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public void setDoTaxa(boolean doTaxa) {
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this.doTaxa = doTaxa;
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}
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public boolean isDoRelTaxa() {
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return doRelTaxa;
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}
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public void setDoRelTaxa(boolean doRelTaxa) {
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this.doRelTaxa = doRelTaxa;
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}
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/**
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* Import name relationships yes/no?.
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* @return
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*/
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public boolean isDoRelNames() {
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return doRelNames;
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}
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public void setDoRelNames(boolean doRelNames) {
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this.doRelNames = doRelNames;
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}
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/**
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* @return the doMetaData
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*/
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public boolean isDoMetaData() {
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return doMetaData;
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}
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/**
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* @param doMetaData the doMetaData to set
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*/
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public void setDoMetaData(boolean doMetaData) {
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this.doMetaData = doMetaData;
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}
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/**
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* @return the doSpecimen
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*/
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public boolean isDoSpecimen() {
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return doSpecimen;
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}
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/**
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* @param doSpecimen the doSpecimen to set
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*/
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public void setDoSpecimen(boolean doSpecimen) {
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this.doSpecimen = doSpecimen;
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}
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/**
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* @return the placeholderClass
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*/
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public ITcsXmlPlaceholderClass getPlaceholderClass() {
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if (placeholderClass == null){
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placeholderClass = new DefaultTcsXmlPlaceholders();
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}
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return placeholderClass;
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}
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/**
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* @param placeholderClass the placeholderClass to set
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*/
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public void setPlaceholderClass(ITcsXmlPlaceholderClass placeholderClass) {
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this.placeholderClass = placeholderClass;
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}
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public boolean isDoInformationImport() {
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return doInformationImport;
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}
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public void setDoInformationImport(boolean doInformationImport) {
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this.doInformationImport = doInformationImport;
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}
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}
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