EDIT

/**

* Copyright (C) 2007 EDIT

* http://www.e-taxonomy.eu

* The contents of this file are subject to the Mozilla Public License Version 1.1

* See LICENSE.TXT at the top of this package for the full license terms.

*/

import eu.etaxonomy.cdm.model.common.Marker;

import eu.etaxonomy.cdm.model.common.MarkerType;

import eu.etaxonomy.cdm.model.common.OriginalSourceType;

import eu.etaxonomy.cdm.model.name.NonViralName;

import eu.etaxonomy.cdm.model.reference.Reference;

import eu.etaxonomy.cdm.model.reference.ReferenceFactory;

 */

public abstract class IndexFungorumImportBase extends CdmImportBase<IndexFungorumImportConfigurator, IndexFungorumImportState> implements ICdmIO<IndexFungorumImportState>, IPartitionedIO<IndexFungorumImportState> {

	private static final Logger logger = Logger.getLogger(IndexFungorumImportBase.class);

	//NAMESPACES

	protected static final String NAMESPACE_REFERENCE = "reference";

	protected static final String NAMESPACE_TAXON = "Taxon";

	protected static final String NAMESPACE_SUPRAGENERIC_NAMES = "SupragenericNames";

	protected static final String NAMESPACE_GENERA = "Genera";

	protected static final String NAMESPACE_SPECIES = "Species";

	protected static final String INCERTAE_SEDIS = "Incertae sedis";

	protected static final String FOSSIL_FUNGI = "Fossil Fungi";

	protected static final String SOURCE_REFERENCE = "SOURCE_REFERENCE";

	//TODO needed?

	/**

	 * @param dbTableName

	 */

	public IndexFungorumImportBase(String pluralString, String dbTableName, Class cdmTargetClass) {

		this.pluralString = pluralString;

		this.cdmTargetClass = cdmTargetClass;

	}

		IndexFungorumImportConfigurator config = state.getConfig();

		Source source = config.getSource();

		String strIdQuery = getIdQuery();

		String strRecordQuery = getRecordQuery(config);

		int recordsPerTransaction = config.getRecordsPerTransaction();

			state.setUnsuccessfull();

			return;

		}

		logger.info("end make " + getPluralString() + " ... " + getSuccessString(true));

		return;

	}

		boolean success = true ;

		Set objectsToSave = new HashSet<CdmBase>();

// 		DbImportMapping<?, ?> mapping = getMapping();

//		mapping.initialize(state, cdmTargetClass);

		ResultSet rs = partitioner.getResultSet();

		try{

			while (rs.next()){

			logger.error("SQLException:" +  e);

			return false;

		}

		partitioner.startDoSave();

		getCommonService().save(objectsToSave);

		return success;

	 */

	protected abstract String getRecordQuery(IndexFungorumImportConfigurator config);

	/**

	 * @return

	 */

		String result = " SELECT id FROM " + getTableName();

		return result;

	}

	/* (non-Javadoc)

	 * @see eu.etaxonomy.cdm.io.berlinModel.in.IPartitionedIO#getPluralString()

	 */

		return pluralString;

	}

		return this.dbTableName;

	}

	protected boolean resultSetHasColumn(ResultSet rs, String columnName){

		try {

			ResultSetMetaData metaData = rs.getMetaData();

            return false;

		}

	}

	protected boolean checkSqlServerColumnExists(Source source, String tableName, String columnName){

		String strQuery = "SELECT  Count(t.id) as n " +

				" FROM sysobjects AS t " +

				" INNER JOIN syscolumns AS c ON t.id = c.id " +

				" (c.name = '" + columnName + "')";

		int n;

		try {

			rs.next();

			e.printStackTrace();

			return false;

		}

	}

	/**

	 * Returns a map that holds all values of a ResultSet. This is needed if a value needs to

	 * be accessed twice

			idSet.add(id);

		}

	}

	/**

	 * Returns true if i is a multiple of recordsPerTransaction

	 * @param i

		startTransaction();

		return (i % recordsPerLoop) == 0;

	}

	protected void doLogPerLoop(int count, int recordsPerLog, String pluralString){

		if ((count % recordsPerLog ) == 0 && count!= 0 ){ logger.info(pluralString + " handled: " + (count));}

	}

	protected void makeAuthorAndPublication(IndexFungorumImportState state, ResultSet rs, NonViralName name) throws SQLException {

		//authors

		if (StringUtils.isNotBlank(authorStr)){

			try {

				parser.parseAuthors(name, authorStr);

				name.setAuthorshipCache(authorStr);

			}

		}

		//page

		String page = rs.getString("PAGE");

		if (StringUtils.isNotBlank(page)){

			name.setNomenclaturalMicroReference(page);

		}

		//Reference

		Reference<?> ref = ReferenceFactory.newGeneric();

		boolean hasInReference = false;

				logger.warn("'AUTHORS' is blank for not empty PUBLISHING_AUTHORS. This is not yet handled.");

			}

		}

		//inRef + inRefAuthor

		if (pubAuthor != null){

			Reference<?> inRef = ReferenceFactory.newGeneric();

			ref.setInReference(inRef);

			hasInReference = true;

		}

		//refAuthor

		TeamOrPersonBase<?> refAuthor = CdmBase.deproxy(name.getCombinationAuthorTeam(), TeamOrPersonBase.class);

		if (refAuthor == null){

			}

		}

		ref.setVolume(volume);

		//year

		String yearOfPubl = rs.getString("YEAR OF PUBLICATION");

		String yearOnPubl = rs.getString("YEAR ON PUBLICATION");

		if (year != null){

			ref.setDatePublished(TimePeriodParser.parseString(year));

		}

		//preliminary, set protected titlecache as Generic Cache Generation with in references currently doesn't fully work yet

		String titleCache = CdmUtils.concat(", ", pubAuthorStr, title);

		if  ( StringUtils.isNotBlank(pubAuthorStr)){

		titleCache = CdmUtils.concat(": ", titleCache, page);

		titleCache = CdmUtils.concat(". ", titleCache, year);

		ref.setTitleCache(titleCache, true);

		//set nom ref

		if (StringUtils.isNotBlank(titleCache)){

			name.setNomenclaturalReference(ref);

		}

	}

	protected MarkerType getNoLastActionMarkerType(IndexFungorumImportState state) {

				"has no last action", "No last action information available", "no last action");

	}

		String strId = (id == null ? null : String.valueOf(id));

		IdentifiableSource source = IdentifiableSource.NewInstance(OriginalSourceType.Import, strId, namespace, sourceReference, null);

		taxon.addSource(source);

		//no last action

		MarkerType hasNoLastAction = getNoLastActionMarkerType(state);

		taxon.addMarker(Marker.NewInstance(hasNoLastAction, true));

		MarkerType missingGUID = getMarkerType(state, PesiTransformer.uuidMarkerGuidIsMissing, "GUID is missing", "GUID is missing", null);

		return missingGUID;

	}

	protected Classification getClassification(IndexFungorumImportState state) {

		Classification result;

			result = makeTreeMemSave(state, sourceReference);

		} else {

			result = getClassificationService().find(classificationUuid);

		return result;

	}

}