Revision c385a1b7
Added by Andreas Müller almost 6 years ago
| app-import/src/main/java/eu/etaxonomy/cdm/io/redlist/germanSL/GermanSLTaxonRelationImport.java | ||
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import org.apache.log4j.Logger; |
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import org.springframework.stereotype.Component; |
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImport; |
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import eu.etaxonomy.cdm.io.mexico.SimpleExcelTaxonImportState; |
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import eu.etaxonomy.cdm.model.common.CdmBase; |
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import eu.etaxonomy.cdm.model.reference.Reference; |
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import eu.etaxonomy.cdm.model.taxon.Classification; |
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import eu.etaxonomy.cdm.model.taxon.Synonym; |
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* |
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*/ |
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@Component |
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public class GermanSLTaxonRelationImport<CONFIG extends GermanSLImportConfigurator> |
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extends SimpleExcelTaxonImport<CONFIG> {
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public class GermanSLTaxonRelationImport extends GermanSLImporBase {
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private static final long serialVersionUID = 3381597141845204995L; |
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|
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private int count = 0; |
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@Override |
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protected void firstPass(SimpleExcelTaxonImportState<CONFIG> state) {
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protected void firstPass(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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count++; |
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Map<String, String> record = state.getOriginalRecord(); |
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String line = state.getCurrentLine() + ": "; |
| ... | ... | |
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String acceptedStr = getValue(record, GermanSLTaxonImport.VALID_NR); |
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String idStr = getValue(record, GermanSLTaxonImport.SPECIES_NR); |
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String statusStr = getValue(record, GermanSLTaxonImport.SYNONYM); |
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NameResult nameResult = GermanSLTaxonImport.makeName (line, record, state); |
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Classification classification = getClassification(state); |
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TaxonBase<?> taxonBase = GermanSLTaxonImport.taxonIdMap.get(idStr); |
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Taxon parent; |
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if (isAccepted(statusStr)){
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if (isAccepted(statusStr, nameResult)){
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TaxonBase<?> parentTmp = GermanSLTaxonImport.taxonIdMap.get(parentStr); |
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if (parentTmp == null){
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logger.warn(line + "Parent is missing: "+ parentStr); |
| ... | ... | |
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} |
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private boolean isAccepted(String statusStr){
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if ("FALSE()".equals(statusStr) || "0".equals(statusStr) || "false".equalsIgnoreCase(statusStr)){
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return true; |
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} else if ("TRUE()".equals(statusStr) || "1".equals(statusStr)|| "true".equalsIgnoreCase(statusStr)){
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return false; |
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}else{
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logger.warn("Unhandled taxon status: " + statusStr);
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return false; |
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} |
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} |
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/** |
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* @param next |
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* @return |
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*/ |
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private Taxon getAccepted(TaxonBase<?> taxonBase) {
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if (taxonBase.isInstanceOf(Taxon.class)){
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return CdmBase.deproxy(taxonBase, Taxon.class); |
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}else{
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Synonym syn = CdmBase.deproxy(taxonBase, Synonym.class); |
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return syn.getAcceptedTaxon(); |
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} |
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} |
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boolean needsFinalSave = true; |
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/** |
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* {@inheritDoc}
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*/ |
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@Override |
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protected void secondPass(SimpleExcelTaxonImportState<CONFIG> state) {
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protected void secondPass(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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if (needsFinalSave){
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getTaxonService().saveOrUpdate(taxaToSave); |
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needsFinalSave = false; |
| ... | ... | |
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/** |
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* @return |
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*/ |
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private Classification getClassification(SimpleExcelTaxonImportState<CONFIG> state) {
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private Classification getClassification(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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if (classification == null){
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GermanSLImportConfigurator config = state.getConfig(); |
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classification = Classification.NewInstance(config.getClassificationName()); |
| ... | ... | |
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} |
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@Override |
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protected boolean isIgnore(SimpleExcelTaxonImportState<CONFIG> state) {
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protected boolean isIgnore(SimpleExcelTaxonImportState<GermanSLImportConfigurator> state) {
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return ! state.getConfig().isDoTaxa(); |
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} |
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} |
Also available in: Unified diff
latest changes to BgbmInstancesUpdater, E+M Import, GermanSL Import, etct